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add config option to handle multiple dataroots (#1531)

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#1513
This commit is contained in:
bmccandless
2020-06-04 19:29:37 -07:00
committed by GitHub
parent df6b42f5d6
commit 99d004d1f0
6 changed files with 240 additions and 60 deletions
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server/common/health.py
+7 -6
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@@ -23,12 +23,13 @@ def health_check(config):
"""
health = {"status": None, "version": "1", "releaseID": cellxgene_version}
checks = [
(config.single_dataset__datapath is not None or config.multi_dataset__dataroot is not None),
_is_accessible(config.single_dataset__datapath, config),
_is_accessible(config.multi_dataset__dataroot, config),
]
health["status"] = "pass" if all(checks) else "fail"
checks = False
if config.single_dataset__datapath is not None:
checks = _is_accessible(config.single_dataset__datapath, config)
elif config.multi_dataset__dataroot is not None:
checks = all([_is_accessible(datapath, config) for datapath in config.multi_dataset__dataroot.values()])
health["status"] = "pass" if checks else "fail"
code = HTTPStatus.OK if health["status"] == "pass" else HTTPStatus.BAD_REQUEST
response = make_response(jsonify(health), code)
response.headers["Content-Type"] = "application/health+json"