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Add a root test target that calls sub-tests

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This commit is contained in:
Matt Weiden
2019-12-19 15:20:41 -08:00
parent 1eef44d5f8
commit 9a0f7c3179
11 changed files with 40 additions and 26 deletions
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server/Makefile
+4
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@@ -10,3 +10,7 @@ lint:
clean:
rm -f app/web/templates/index.html
rm -rf app/web/static
.PHONY: unit-test
unit-test:
pytest -s test
server/test/test_api.py
+1 -1
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@@ -19,7 +19,7 @@ class EndPoints(unittest.TestCase):
@classmethod
def setUpClass(cls):
cls.ps = Popen(["cellxgene", "launch", "example-dataset/pbmc3k.h5ad", "--verbose", "--port", "5005"])
cls.ps = Popen(["cellxgene", "launch", "../example-dataset/pbmc3k.h5ad", "--verbose", "--port", "5005"])
session = requests.Session()
for i in range(90):
try:
server/test/test_nan_rest.py
+1 -1
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@@ -21,7 +21,7 @@ class WithNaNs(unittest.TestCase):
@classmethod
def setUpClass(cls):
cls.ps = Popen(
["cellxgene", "launch", "server/test/test_datasets/nan.h5ad", "--verbose", "--port", "5006"]
["cellxgene", "launch", "test/test_datasets/nan.h5ad", "--verbose", "--port", "5006"]
)
session = requests.Session()
for i in range(90):
server/test/test_nan_scanpy_engine.py
+2 -2
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@@ -21,12 +21,12 @@ class NaNTest(unittest.TestCase):
}
with warnings.catch_warnings():
warnings.simplefilter("ignore", category=UserWarning)
self.data = ScanpyEngine(DataLocator("server/test/test_datasets/nan.h5ad"), self.args)
self.data = ScanpyEngine(DataLocator("test/test_datasets/nan.h5ad"), self.args)
self.data._create_schema()
def test_load(self):
with self.assertWarns(UserWarning):
ScanpyEngine(DataLocator("server/test/test_datasets/nan.h5ad"), self.args)
ScanpyEngine(DataLocator("test/test_datasets/nan.h5ad"), self.args)
def test_init(self):
self.assertEqual(self.data.cell_count, 100)
server/test/test_scanpy_engine.py
+6 -6
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@@ -19,13 +19,13 @@ Test the scanpy engine using the pbmc3k data set.
@parameterized_class(("data_locator", "backed"), [
("example-dataset/pbmc3k.h5ad", False),
("server/test/test_datasets/pbmc3k-CSC-gz.h5ad", False),
("server/test/test_datasets/pbmc3k-CSR-gz.h5ad", False),
("../example-dataset/pbmc3k.h5ad", False),
("test/test_datasets/pbmc3k-CSC-gz.h5ad", False),
("test/test_datasets/pbmc3k-CSR-gz.h5ad", False),
("example-dataset/pbmc3k.h5ad", True),
("server/test/test_datasets/pbmc3k-CSC-gz.h5ad", True),
("server/test/test_datasets/pbmc3k-CSR-gz.h5ad", True),
("../example-dataset/pbmc3k.h5ad", True),
("test/test_datasets/pbmc3k-CSC-gz.h5ad", True),
("test/test_datasets/pbmc3k-CSR-gz.h5ad", True),
])
class EngineTest(unittest.TestCase):
def setUp(self):
server/test/test_scanpy_engine_data_load.py
+2 -2
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@@ -11,7 +11,7 @@ class DataLoadEngineTest(unittest.TestCase):
Test file loading, including deferred loading/update.
"""
def setUp(self):
self.data_file = DataLocator("example-dataset/pbmc3k.h5ad")
self.data_file = DataLocator("../example-dataset/pbmc3k.h5ad")
self.data = ScanpyEngine()
def test_init(self):
@@ -76,7 +76,7 @@ class DataLocatorEngineTest(unittest.TestCase):
self.assertEqual(data.gene_count, 1838)
def test_posix_file(self):
locator = DataLocator("example-dataset/pbmc3k.h5ad")
locator = DataLocator("../example-dataset/pbmc3k.h5ad")
data = ScanpyEngine(locator, self.args)
self.stdAsserts(data)
server/test/test_writable_annotation.py
+1 -1
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@@ -27,7 +27,7 @@ class WritableAnnotationTest(unittest.TestCase):
"annotations_file": self.annotations_file,
"annotations_output_dir": None
}
self.data = ScanpyEngine(DataLocator("example-dataset/pbmc3k.h5ad"), args)
self.data = ScanpyEngine(DataLocator("../example-dataset/pbmc3k.h5ad"), args)
def tearDown(self):
shutil.rmtree(self.tmpDir)