Overhaul the whole documentation site

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Sidney Bell
2019-11-07 17:03:33 -08:00
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<img src="cellxgene-logo.svg" width="300">
_an interactive explorer for single-cell transcriptomics data_
---
title: Index
subtitle: Index
layout: default
---
# Quick start
Whether you need to visualize one thousand cells or one million, cellxgene helps you gain insight into your single-cell data.
## features
#### flexible selections, coloring, and differential expression of your selected sets of cells
<img src="diffexp.gif" width="600"/>
#### single-gene analyses (e.g. expression analysis)
<img src="customGene.gif" width="600" />
## quick start
To install cellxgene you need Python 3.6+. We recommend [installing cellxgene into a conda or virtual environment.](/faq.html#how-do-i-create-a-python-environment-for-cellxgene)
@@ -23,19 +17,20 @@ pip install cellxgene
Download an example [anndata](https://anndata.readthedocs.io/en/latest/) file
``` bash
curl -o pbmc3k.h5ad https://raw.githubusercontent.com/chanzuckerberg/cellxgene/master/example-dataset/pbmc3k.h5ad
curl -o tabula-muris.h5ad https://cellxgene-example-data.czi.technology/tabula-muris.h5ad.zip
unzip tabula-muris.h5ad.zip
```
Launch cellxgene
``` bash
cellxgene launch pbmc3k.h5ad --open
cellxgene launch tabula-muris.h5ad --open
```
To explore more datasets already formatted for cellxgene, see [Data](data) or
visit [Getting Started](getting-started) to learn more about formatting your own
To explore more datasets already formatted for cellxgene, check out the [Demo data](demo-data) or
see [Preparing your data](prepare) to learn more about formatting your own
data for cellxgene.
## getting help
# Getting help
We'd love to hear from you!