diff --git a/README.md b/README.md index 0312bfe4..5ee59fb8 100644 --- a/README.md +++ b/README.md @@ -4,6 +4,12 @@ [![DOI](https://zenodo.org/badge/105615409.svg)](https://zenodo.org/badge/latestdoi/105615409) +[![PyPI](https://img.shields.io/pypi/v/cellxgene)](https://pypi.org/project/cellxgene/) + +[![PyPI - Downloads](https://img.shields.io/pypi/dm/cellxgene)](https://pypistats.org/packages/cellxgene) + +[![GitHub last commit](https://img.shields.io/github/last-commit/chanzuckerberg/cellxgene)](https://github.com/chanzuckerberg/cellxgene/pulse) + _cellxgene_ (pronounced "sell-by-jean") is an interactive data explorer for single-cell transcriptomics datasets, such as those coming from the [Human Cell Atlas](https://humancellatlas.org). Leveraging modern web development techniques to enable fast visualizations of at least 1 million cells, we hope to enable biologists and computational researchers to explore their data, and to demonstrate general, scalable, and reusable patterns for scientific data visualization. @@ -17,18 +23,20 @@ _cellxgene_ (pronounced "sell-by-jean") is an interactive data explorer for sing To install _cellxgene_ you need Python 3.6+. We recommend [installing _cellxgene_ into a conda or virtual environment.](https://chanzuckerberg.github.io/cellxgene/faq.html#how-do-i-create-a-python-36-environment-for-cellxgene) Install the package. -``` bash + +```bash pip install cellxgene ``` Download an example [anndata](https://anndata.readthedocs.io/en/latest/) file -``` bash +```bash curl -o pbmc3k.h5ad https://raw.githubusercontent.com/chanzuckerberg/cellxgene/master/example-dataset/pbmc3k.h5ad ``` Launch _cellxgene_ -``` bash + +```bash cellxgene launch pbmc3k.h5ad --open ```