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moving server over

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This commit is contained in:
Colin Megill
2021-03-08 11:54:29 -08:00
parent 21d1ca1bc8
commit 9eca912f8c
9 changed files with 33 additions and 222 deletions
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server/common/annotations/annotations.py
+1 -11
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@@ -8,7 +8,7 @@ from server.common.utils.type_conversion_utils import get_schema_type_hint_of_ar
class Annotations(metaclass=ABCMeta):
""" baseclass for annotations, including ontologies and gene sets"""
""" baseclass for annotations, including ontologies"""
""" our default ontology is the PURL for the Cell Ontology.
See http://www.obofoundry.org/ontology/cl.html """
@@ -64,16 +64,6 @@ class Annotations(metaclass=ABCMeta):
"""Write the labels (df) to a persistent storage such that it can later be read"""
pass
@abstractmethod
def read_genesets(self, data_adaptor):
"""Return the genesets as a list of list, ie, [['gsname', ['gene1', 'gene2']], ...] """
pass
@abstractmethod
def write_genesets(self, gs, data_adaptor):
"""Write the genesets (gs) to a persistent storage such that it can later be read"""
pass
@abstractmethod
def update_parameters(self, parameters, data_adaptor):
"""Update configuration parameters that describe information about the annotations feature"""