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https://github.com/chanzuckerberg/cellxgene.git
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add world helper method for var
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@@ -6,7 +6,7 @@ import * as kvCache from "./keyvalcache";
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/*
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/*
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World is a subset of universe. Most code should use world, and should
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World is a subset of universe. Most code should use world, and should
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(generally) not use Universe. World contains any per-obs or per-var data
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(generally) not use Universe. World contains any per-obs or per-var data
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that must be consisstent acorss the app when we view/manipulate subsets
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that must be consistent acorss the app when we view/manipulate subsets
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of Universe.
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of Universe.
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Private API indicated by leading underscore in key name (eg, _foo). Anything else
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Private API indicated by leading underscore in key name (eg, _foo). Anything else
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@@ -278,6 +278,35 @@ function deduceDimensionType(attributes, fieldName) {
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return dimensionType;
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return dimensionType;
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}
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}
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/*
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Return a crossfilter dimension for the specified world & named gene.
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NOTE: this assumes that the expression data was already loaded,
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by calling an appropriate action creator.
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Caller needs to *save* this dimension somewhere for it to be later used.
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Dimension must be destroyed by calling dimension.dispose()
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when it is no longer needed
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(it will not be garbage collected without this call)
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*/
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export function createVarDimensionsMap(
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world,
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_worldVarDataCache,
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crossfilter,
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geneName
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) {
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const { varDataCache, worldObsIndex } = world;
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const varData = _worldVarDataCache[geneName];
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const worldIndex = worldObsIndex ? idx => worldObsIndex[idx] : idx => idx;
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console.log("in createVarDataCrossfilterDimensionsForGeneName!", varData);
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return crossfilter.dimension(r => {
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varData[r.__obsIndex__];
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}, Float32Array);
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}
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export function createObsDimensionMap(crossfilter, world) {
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export function createObsDimensionMap(crossfilter, world) {
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/*
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/*
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create and return a crossfilter dimension for every obs annotation
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create and return a crossfilter dimension for every obs annotation
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