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Adding minor tests to scanpy calculation code

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Charlotte Weaver
2018-07-16 11:48:53 -07:00
parent 05b9a6833d
commit a5423a6911
2 changed files with 20 additions and 0 deletions
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server/app/scanpy_engine/scanpy_engine.py
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@@ -124,6 +124,7 @@ class ScanpyEngine(CXGDriver):
expression_1 = self.data.X[cells_idx_1, :]
expression_2 = self.data.X[cells_idx_2, :]
diff_exp = stats.ttest_ind(expression_1, expression_2)
# TODO break this up into functions
set1 = np.logical_and(diff_exp.pvalue < pval, diff_exp.statistic > 0)
set2 = np.logical_and(diff_exp.pvalue < pval, diff_exp.statistic < 0)
stat1 = diff_exp.statistic[set1]