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[WIP] Patch for anndata 0.7 (#1132)

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* Fix JSON encoding bug introduced by anndata 0.7

* Add anndata csr and csc classes to allowed matrix proxy inputs
This commit is contained in:
Sidney Bell
2020-01-28 16:12:43 -08:00
committed by GitHub
parent 3dd50e5676
commit a927d733c2
4 changed files with 22 additions and 19 deletions
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server/requirements.txt
+17 -18
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@@ -1,18 +1,17 @@
# TEMP anndata 0.7 breaks cellxgene - workaround
anndata==0.6.22post1
click>=6.7
fastobo>=0.6.1
Flask>=1.0.2
Flask-Caching>=1.4.0
Flask-Compress>=1.4.0
Flask-Cors>=3.0.6
Flask-RESTful>=0.3.6
flatbuffers>=1.10.0
fsspec>=0.4.4
numpy>=1.15.2
pandas>=0.24.2
scipy>=1.3.0
tables==3.5.1
# TEMP workaround for https://github.com/theislab/scanpy/issues/832 aka h5py regression
h5py==2.9.0
requests>=2.22.0
anndata>=0.6.2
click>=6.7
fastobo>=0.6.1
Flask>=1.0.2
Flask-Caching>=1.4.0
Flask-Compress>=1.4.0
Flask-Cors>=3.0.6
Flask-RESTful>=0.3.6
flatbuffers>=1.10.0
fsspec>=0.4.4
numpy>=1.15.2
pandas>=0.24.2
scipy>=1.3.0
tables==3.5.1
# TEMP workaround for https://github.com/theislab/scanpy/issues/832 aka h5py regression
h5py==2.9.0
requests>=2.22.0