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Add smoke test for annotations features

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This commit is contained in:
Matt Weiden
2020-02-12 19:33:18 -08:00
parent ac13b31e13
commit ab141f2a7b
21 changed files with 2937 additions and 76 deletions
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server/test/test_writable_annotation.py
+2 -3
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@@ -38,7 +38,6 @@ class WritableAnnotationTest(unittest.TestCase):
def test_error_checks(self):
# verify that the expected errors are generated
n_rows = self.data.data.obs.shape[0]
fbs_bad = self.make_fbs({"louvain": pd.Series(["undefined" for l in range(0, n_rows)], dtype="category")})
@@ -64,7 +63,7 @@ class WritableAnnotationTest(unittest.TestCase):
self.assertTrue(path.exists(self.annotations_file))
df = pd.read_csv(self.annotations_file, index_col=0, header=0, comment="#")
self.assertEqual(df.shape, (n_rows, 2))
self.assertEqual(set(df.columns), set(["cat_A", "cat_B"]))
self.assertEqual(set(df.columns), {"cat_A", "cat_B"})
self.assertTrue(self.data.original_obs_index.equals(df.index))
self.assertTrue(np.all(df["cat_A"] == ["label_A" for l in range(0, n_rows)]))
self.assertTrue(np.all(df["cat_B"] == ["label_B" for l in range(0, n_rows)]))
@@ -80,7 +79,7 @@ class WritableAnnotationTest(unittest.TestCase):
self.assertEqual(res, json.dumps({"status": "OK"}))
self.assertTrue(path.exists(self.annotations_file))
df = pd.read_csv(self.annotations_file, index_col=0, header=0, comment="#")
self.assertEqual(set(df.columns), set(["cat_A", "cat_C"]))
self.assertEqual(set(df.columns), {"cat_A", "cat_C"})
self.assertTrue(np.all(df["cat_A"] == ["label_A1" for l in range(0, n_rows)]))
self.assertTrue(np.all(df["cat_C"] == ["label_C" for l in range(0, n_rows)]))