fork/cellxgene
1
0
Fork 0
mirror of https://github.com/chanzuckerberg/cellxgene.git synced 2026-10-01 16:58:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

config refactor (#1854)

Browse Source 
* split out config

* add tests for base and app config, refactor client config out of app config

* refactor default config retrieval

* create config test class and helper functions

* move default_config into server to fix import issue
This commit is contained in:
Madison Dunitz
2020-09-29 16:42:46 -05:00
committed by GitHub
parent 1145f61c78
commit af3c6e1d8e
57 changed files with 2667 additions and 1599 deletions
Download Patch File Download Diff File Expand all files Collapse all files
server/test/fixtures/database/__init__.py
Vendored
+8 -18
View File
@@ -29,34 +29,26 @@ class TestDatabase:
def _create_test_user(self):
user = CellxGeneUser(id="test_user_id")
user2 = CellxGeneUser(id='1234')
user2 = CellxGeneUser(id="1234")
self.db.session.add(user)
self.db.session.add(user2)
self.db.session.commit()
def _create_test_dataset(self):
dataset = CellxGeneDataset(
name="test_dataset",
)
dataset = CellxGeneDataset(name="test_dataset",)
self.db.session.add(dataset)
self.db.session.commit()
def _create_test_annotation(self):
dataset = self.db.query([CellxGeneDataset],
[CellxGeneDataset.name == "test_dataset"],
)[0]
annotation = Annotation(
tiledb_uri="tiledb_uri",
user_id="test_user_id",
dataset_id=str(dataset.id)
)
dataset = self.db.query([CellxGeneDataset], [CellxGeneDataset.name == "test_dataset"],)[0]
annotation = Annotation(tiledb_uri="tiledb_uri", user_id="test_user_id", dataset_id=str(dataset.id))
self.db.session.add(annotation)
self.db.session.commit()
@staticmethod
def get_random_string():
letters = string.ascii_lowercase
return ''.join(random.choice(letters) for i in range(12))
return "".join(random.choice(letters) for i in range(12))
def _create_test_users(self, user_count: int = 10):
users = []
@@ -80,10 +72,8 @@ class TestDatabase:
for i in range(annotation_count):
dataset = self.order_by_random(CellxGeneDataset)
user = self.order_by_random(CellxGeneUser)
annotations.append(Annotation(
tiledb_uri=self.get_random_string(),
user_id=user.id,
dataset_id=str(dataset.id)
))
annotations.append(
Annotation(tiledb_uri=self.get_random_string(), user_id=user.id, dataset_id=str(dataset.id))
)
self.db.session.add_all(annotations)
self.db.session.commit()