add --obs-names and --var-names CLI params (#371)

* add --obs-names and --var-names CLI params

* fix lint

* performance improvements in scanpy engine

* fix lint

* fix typo

* correctly handle sparse formats in diffexp

* fix diffexp and 1d slicing

* diffexp uses t-stat, not pval; clean up arg handling

* make _slice a static method

* revise scanpy tests to match new API
This commit is contained in:
Bruce Martin
2018-10-30 14:07:38 -07:00
committed by GitHub
parent 01369801fc
commit b181751493
7 changed files with 133 additions and 88 deletions
+8 -8
View File
@@ -6,6 +6,10 @@
},
"annotations": {
"obs": [
{
"name": "name",
"type": "string"
},
{
"name": "n_genes",
"type": "int32"
@@ -31,20 +35,16 @@
"Dendritic cells",
"Megakaryocytes"
]
},
{
"name": "name",
"type": "string"
}
],
"var": [
{
"name": "n_cells",
"type": "int32"
},
{
"name": "name",
"type": "string"
},
{
"name": "n_cells",
"type": "int32"
}
]
}