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https://github.com/chanzuckerberg/cellxgene.git
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add --obs-names and --var-names CLI params (#371)
* add --obs-names and --var-names CLI params * fix lint * performance improvements in scanpy engine * fix lint * fix typo * correctly handle sparse formats in diffexp * fix diffexp and 1d slicing * diffexp uses t-stat, not pval; clean up arg handling * make _slice a static method * revise scanpy tests to match new API
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@@ -6,6 +6,10 @@
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},
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"annotations": {
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"obs": [
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{
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"name": "name",
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"type": "string"
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},
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{
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"name": "n_genes",
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"type": "int32"
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@@ -31,20 +35,16 @@
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"Dendritic cells",
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"Megakaryocytes"
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]
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},
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{
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"name": "name",
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"type": "string"
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}
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],
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"var": [
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{
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"name": "n_cells",
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"type": "int32"
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},
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{
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"name": "name",
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"type": "string"
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},
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{
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"name": "n_cells",
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"type": "int32"
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}
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]
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}
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