mirror of
https://github.com/chanzuckerberg/cellxgene.git
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Update hosted app to get the oauth client secret from the secret manager (#1713)
* Update the hosted app to get the oauth client secret from the secret manager * fix to eb app, and set no cache on oauth endpoints
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+44
-20
@@ -31,7 +31,7 @@ except Exception:
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sys.exit(1)
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def get_secret_key(region_name, secret_name, secret_key):
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def get_secret_key(region_name, secret_name):
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session = boto3.session.Session()
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client = session.client(service_name="secretsmanager", region_name=region_name)
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@@ -40,7 +40,7 @@ def get_secret_key(region_name, secret_name, secret_key):
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if "SecretString" in get_secret_value_response:
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var = get_secret_value_response["SecretString"]
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secret = json.loads(var)
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return secret.get(secret_key)
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return secret
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except Exception:
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logging.critical("Caught exception during get_secret_key", exc_info=True)
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sys.exit(1)
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@@ -48,6 +48,46 @@ def get_secret_key(region_name, secret_name, secret_key):
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return None
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def handle_config_from_secret(app_config):
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"""Update configuration from the secret manager"""
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secret_name = os.getenv("CXG_AWS_SECRET_NAME")
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if not secret_name:
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return
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# need to find the secret manager region.
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# 1. from CXG_AWS_SECRET_REGION_NAME
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# 2. discover from dataroot location (if on s3)
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# 3. discover from config file location (if on s3)
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secret_region_name = os.getenv("CXG_AWS_SECRET_REGION_NAME")
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if secret_region_name is None:
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secret_region_name = discover_s3_region_name(app_config.multi_dataset__dataroot)
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if not secret_region_name:
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secret_region_name = discover_s3_region_name(config_file)
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if not secret_region_name:
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logging.error("Could not determine the AWS Secret Manager region")
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sys.exit(1)
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secrets = get_secret_key(secret_region_name, secret_name)
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if not secrets:
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return
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keyattrs = (
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("flask_secret_key", "app__flask_secret_key"),
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("oauth_client_secret", "authentication__params_oauth__client_secret")
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)
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for key, attr in keyattrs:
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curval = getattr(app_config.server_config, attr)
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if curval:
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continue
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# replace the attr with the secret if it is not set
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val = secrets.get(key)
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if val:
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logging.error(f"set {attr} from secret")
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app_config.update_server_config(**{attr : val})
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class WSGIServer(Server):
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def __init__(self, app_config):
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super().__init__(app_config)
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@@ -158,30 +198,14 @@ try:
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logging.info("Configuration from CXG_DATAROOT")
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app_config.update_server_config(multi_dataset__dataroot=dataroot)
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secret_name = os.getenv("CXG_AWS_SECRET_NAME")
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if secret_name:
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# need to find the secret manager region.
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# 1. from CXG_AWS_SECRET_REGION_NAME
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# 2. discover from dataroot location (if on s3)
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# 3. discover from config file location (if on s3)
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secret_region_name = os.getenv("CXG_AWS_SECRET_REGION_NAME")
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if secret_region_name is None:
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secret_region_name = discover_s3_region_name(app_config.multi_dataset__dataroot)
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if not secret_region_name:
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secret_region_name = discover_s3_region_name(config_file)
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if not secret_region_name:
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logging.error("Could not determine the AWS Secret Manager region")
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sys.exit(1)
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flask_secret_key = get_secret_key(secret_region_name, secret_name, 'flask_secret_key')
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app_config.update_server_config(app__flask_secret_key=flask_secret_key)
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# update from secret manager
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handle_config_from_secret(app_config)
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# features are unsupported in the current hosted server
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app_config.update_default_dataset_config(
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user_annotations__enable=False, embeddings__enable_reembedding=False,
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)
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app_config.update_server_config(multi_dataset__allowed_matrix_types=["cxg"],)
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app_config.complete_config(logging.info)
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if not app_config.server_config.app__flask_secret_key:
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