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Add a function to check the configuration for errors. (#1919)

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This can be used as a sanity check before a deployment:

  chanzuckerberg/single-cell#63
This commit is contained in:
bmccandless
2020-10-08 08:44:09 -07:00
committed by GitHub
parent 6c1756f852
commit b5ec43c4b1
11 changed files with 136 additions and 41 deletions
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server/test/unit/common/config/test_dataset_config.py
+7 -3
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@@ -19,6 +19,7 @@ class TestDatasetConfig(ConfigTests):
def setUp(self):
self.config_file_name = f"{unittest.TestCase.id(self).split('.')[-1]}.yml"
self.config = AppConfig()
self.config.update_server_config(app__flask_secret_key="secret")
self.config.update_server_config(multi_dataset__dataroot=FIXTURES_ROOT)
self.dataset_config = self.config.default_dataset_config
self.config.complete_config()
@@ -155,7 +156,8 @@ class TestDatasetConfig(ConfigTests):
# test for illegal url_dataroots
for illegal in ("../b", "!$*", "\\n", "", "(bad)"):
config.update_server_config(
multi_dataset__dataroot={"tag": {"base_url": illegal, "dataroot": f"{PROJECT_ROOT}/example-dataset"}}
app__flask_secret_key="secret",
multi_dataset__dataroot={"tag": {"base_url": illegal, "dataroot": f"{PROJECT_ROOT}/example-dataset"}},
)
with self.assertRaises(ConfigurationError):
config.complete_config()
@@ -163,17 +165,19 @@ class TestDatasetConfig(ConfigTests):
# test for legal url_dataroots
for legal in ("d", "this.is-okay_", "a/b"):
config.update_server_config(
multi_dataset__dataroot={"tag": {"base_url": legal, "dataroot": f"{PROJECT_ROOT}/example-dataset"}}
app__flask_secret_key="secret",
multi_dataset__dataroot={"tag": {"base_url": legal, "dataroot": f"{PROJECT_ROOT}/example-dataset"}},
)
config.complete_config()
# test that multi dataroots work end to end
config.update_server_config(
app__flask_secret_key="secret",
multi_dataset__dataroot=dict(
s1=dict(dataroot=f"{PROJECT_ROOT}/example-dataset", base_url="set1/1/2"),
s2=dict(dataroot=f"{FIXTURES_ROOT}", base_url="set2"),
s3=dict(dataroot=f"{FIXTURES_ROOT}", base_url="set3"),
)
),
)
# Change this default to test if the dataroot overrides below work.