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https://github.com/chanzuckerberg/cellxgene.git
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binary wire format with flatbuffers (#509)
* first flatbuffer schema * do not lint auto-generated files * add flatbuffers package * add flatbuffer module * wire up /data/X/T route * use flatbuffers for matrix data fetc * clarity and comments * add flatbuffer layout route * clean up obsolete code * fix tests * move flake8 config to setup.cfg * add comments * lint * rework layout routes for fbs * add more type support to fbs * lint * add flatbuffer support for annotations * function name improvements * fix botched merge with master * remove unused import * route cleanup for flatbuffers * rename function for clarity * add missing globals to Jest tests * fix client JS tests * fix routes for Python tests * comments for clarity * non-finite floating point hardening * more non-finite number handling * lint * fix tests for summarizeAnnotations * harden diffexp calculation against FP errors * cleanup unused code * lint * add encoding tests for flatbuffers * application type specified as strings * fix spelling error * improve variable names * add note about documentation gap * rename FBS DataFrame to Matrix
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@@ -168,10 +168,13 @@ describe("createObsDimensionMap", () => {
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*/
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const { dimensionMap } = defaultBigBang();
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const annotationNames = _.map(
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REST.schema.schema.annotations.obs,
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c => c.name
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);
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const schemaByObsName = _.keyBy(REST.schema.schema.annotations.obs, "name");
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expect(dimensionMap).toBeDefined();
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REST.annotationsObs.names.forEach(name => {
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annotationNames.forEach(name => {
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const dim = dimensionMap[obsAnnoDimensionName(name)];
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if (name === "name") {
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expect(dim).toBeUndefined();
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