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https://github.com/chanzuckerberg/cellxgene.git
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rename data-dir cli param
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@@ -36,7 +36,7 @@ def annotation_args(func):
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)
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)
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@click.option(
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@click.option(
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"--annotations-dir",
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"--annotations-dir",
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"--data-dir",
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"--user-generated-data-dir",
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default=DEFAULT_CONFIG.default_dataset_config.user_annotations__local_file_csv__directory,
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default=DEFAULT_CONFIG.default_dataset_config.user_annotations__local_file_csv__directory,
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show_default=False,
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show_default=False,
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multiple=False,
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multiple=False,
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@@ -70,7 +70,7 @@ def annotation_args(func):
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show_default=True,
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show_default=True,
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multiple=False,
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multiple=False,
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metavar="<path>",
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metavar="<path>",
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help="CSV file to initialize editing of gene sets; will be altered in-place. Incompatible with --data-dir.",
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help="CSV file to initialize editing of gene sets; will be altered in-place. Incompatible with --user-generated-data-dir.",
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)
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)
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@functools.wraps(func)
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@functools.wraps(func)
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def wrapper(*args, **kwargs):
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def wrapper(*args, **kwargs):
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