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Updates due dependency version changes. (#1960)

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* Updates due dependency version changes.

h5py recently changes and now values once returned as str are now returned as bytes.
This would have caused a much larger change, so instead the version is restricted to <3.0.0.

This caused the bulk of the testing failues.
A few other changes were needed to make a few other tests pass.

 #1959
This commit is contained in:
bmccandless
2020-11-01 12:36:38 -08:00
committed by GitHub
parent 3b6c46ba86
commit b9e132a00c
4 changed files with 44 additions and 13 deletions
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server/test/unit/common/test_writable_annotation.py
+5 -3
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@@ -129,9 +129,11 @@ class WritableTileDBStoredAnnotationTest(unittest.TestCase):
with self.assertRaises(KeyError):
self.annotation_put_fbs(fbs_bad)
@patch("server.common.annotations.hosted_tiledb.current_app")
def test_write_labels_stores_df_as_tiledb_array(self, mock_user_id):
mock_user_id.auth.get_user_id.return_value = "1234"
@patch("server.common.annotations.hosted_tiledb.AnnotationsHostedTileDB.get_user_id")
@patch("server.common.annotations.hosted_tiledb.AnnotationsHostedTileDB.get_user_name")
def test_write_labels_stores_df_as_tiledb_array(self, mock_user_name, mock_user_id):
mock_user_id.return_value = "1234"
mock_user_name.return_value = "user1234"
self.annotations.write_labels(self.df, self.data)
# get uri
dataset_id = self.db.query([CellxGeneDataset], [CellxGeneDataset.name == self.data.get_location()])[0].id