From c106ebc525eec6f8d62d51fc1fc0af73cc514983 Mon Sep 17 00:00:00 2001 From: bmccandless Date: Fri, 23 Oct 2020 15:14:31 -0700 Subject: [PATCH] smnall fix to the test suite. (#1944) I noticed a few tests failed when run individually, but not as a suite. #1942 --- server/test/unit/cli/test_launch.py | 10 +++++----- .../data_anndata/test_anndata_adaptor_data_load.py | 2 ++ 2 files changed, 7 insertions(+), 5 deletions(-) diff --git a/server/test/unit/cli/test_launch.py b/server/test/unit/cli/test_launch.py index ac388cc0..5569cfae 100644 --- a/server/test/unit/cli/test_launch.py +++ b/server/test/unit/cli/test_launch.py @@ -21,8 +21,8 @@ class CLIPLaunchTests(unittest.TestCase): shutil.rmtree(cls.tmp_dir) -def test_dump_default_config(self): - os.system(f"cellxgene launch --dump-default-config > {self.tmp_dir}/test_config_dump.txt") - with open(f"{self.tmp_dir}/expected_config_dump.txt", "w") as expected_config: - expected_config.write(yaml.dump(default_config)) - filecmp.cmp(f"{self.tmp_dir}/expected_config_dump.txt", f"{self.tmp_dir}/test_config_dump.txt") + def test_dump_default_config(self): + os.system(f"cellxgene launch --dump-default-config > {self.tmp_dir}/test_config_dump.txt") + with open(f"{self.tmp_dir}/expected_config_dump.txt", "w") as expected_config: + expected_config.write(yaml.dump(default_config)) + filecmp.cmp(f"{self.tmp_dir}/expected_config_dump.txt", f"{self.tmp_dir}/test_config_dump.txt") diff --git a/server/test/unit/data_anndata/test_anndata_adaptor_data_load.py b/server/test/unit/data_anndata/test_anndata_adaptor_data_load.py index b3db3cb3..9724eadb 100644 --- a/server/test/unit/data_anndata/test_anndata_adaptor_data_load.py +++ b/server/test/unit/data_anndata/test_anndata_adaptor_data_load.py @@ -16,6 +16,7 @@ class DataLoadAdaptorTest(unittest.TestCase): self.data_file = DataLocator(f"{PROJECT_ROOT}/example-dataset/pbmc3k.h5ad") config = AppConfig() config.update_server_config(single_dataset__datapath=self.data_file.path) + config.update_server_config(app__flask_secret_key="secret") config.complete_config() self.data = AnndataAdaptor(self.data_file, config) @@ -45,6 +46,7 @@ class DataLocatorAdaptorTest(unittest.TestCase): config.update_server_config( single_dataset__obs_names=None, single_dataset__var_names=None, ) + config.update_server_config(app__flask_secret_key="secret") config.update_default_dataset_config( embeddings__names=["umap"], presentation__max_categories=100, diffexp__lfc_cutoff=0.01, )