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fix: underscore snakecase notation to hyphenated snakecase for diffexp-may-be-slow (#2687)

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Timmy Huang
2024-09-05 10:09:13 -07:00
committed by GitHub
parent 7bf5add6ef
commit c425d2e0b0
2 changed files with 2 additions and 2 deletions
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server/common/config/dataset_config.py
+1 -1
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@@ -176,7 +176,7 @@ class DatasetConfig(BaseConfig):
self.validate_correct_type_of_configuration_attribute("diffexp__top_n", int) self.validate_correct_type_of_configuration_attribute("diffexp__top_n", int)
data_adaptor = self.get_data_adaptor() data_adaptor = self.get_data_adaptor()
if self.diffexp__enable and data_adaptor.parameters.get("diffexp_may_be_slow", False): if self.diffexp__enable and data_adaptor.parameters.get("diffexp-may-be-slow", False):
context["messagefn"]( context["messagefn"](
"CAUTION: due to the size of your dataset, " "running differential expression may take longer or fail." "CAUTION: due to the size of your dataset, " "running differential expression may take longer or fail."
) )
server/data_anndata/anndata_adaptor.py
+1 -1
View File
@@ -211,7 +211,7 @@ class AnndataAdaptor(DataAdaptor):
# heuristic # heuristic
n_values = self.data.shape[0] * self.data.shape[1] n_values = self.data.shape[0] * self.data.shape[1]
if (n_values > 1e8 and self.server_config.adaptor__anndata_adaptor__backed is True) or (n_values > 5e8): if (n_values > 1e8 and self.server_config.adaptor__anndata_adaptor__backed is True) or (n_values > 5e8):
self.parameters.update({"diffexp_may_be_slow": True}) self.parameters.update({"diffexp-may-be-slow": True})
def _is_valid_layout(self, arr): def _is_valid_layout(self, arr):
"""return True if this layout data is a valid array for front-end presentation: """return True if this layout data is a valid array for front-end presentation: