From c9a56fa73a7e03b8c65c54fe9dc1feb9c5153c67 Mon Sep 17 00:00:00 2001
From: Sidney Bell <sidneymbell@users.noreply.github.com>
Date: Thu, 4 Apr 2019 12:16:30 -0700
Subject: [PATCH] Update scanpy version (#688)

Update to version 1.3.7
---
 server/app/scanpy_engine/scanpy_engine.py | 2 +-
 server/cli/prepare.py                     | 2 +-
 server/requirements.txt                   | 3 +--
 3 files changed, 3 insertions(+), 4 deletions(-)

diff --git a/server/app/scanpy_engine/scanpy_engine.py b/server/app/scanpy_engine/scanpy_engine.py
index 88b6bf29..1d27b362 100644
--- a/server/app/scanpy_engine/scanpy_engine.py
+++ b/server/app/scanpy_engine/scanpy_engine.py
@@ -2,7 +2,7 @@ import warnings
 
 import numpy as np
 from pandas.core.dtypes.dtypes import CategoricalDtype
-import scanpy.api as sc
+import scanpy as sc
 
 from server.app.driver.driver import CXGDriver
 from server.app.util.constants import Axis, DEFAULT_TOP_N
diff --git a/server/cli/prepare.py b/server/cli/prepare.py
index 58d1f392..ed031dc7 100644
--- a/server/cli/prepare.py
+++ b/server/cli/prepare.py
@@ -63,7 +63,7 @@ def prepare(
     import matplotlib
 
     matplotlib.use("Agg")
-    import scanpy.api as sc
+    import scanpy as sc
 
     # scanpy settings
     sc.settings.verbosity = 0
diff --git a/server/requirements.txt b/server/requirements.txt
index e0c0c0c3..6219c809 100644
--- a/server/requirements.txt
+++ b/server/requirements.txt
@@ -1,4 +1,3 @@
-anndata>=0.6.13
 click>=6.7
 Flask>=1.0.2
 Flask-Caching>=1.4.0
@@ -9,7 +8,7 @@ flatbuffers>=1.10.0
 matplotlib>=2.2
 numpy>=1.15.2
 pandas>=0.23.1
-scanpy>=1.3.2
+scanpy>=1.3.7
 scipy>=1.1.0
 scikit-learn>=0.19.1,!=0.20.0
 tables>=3.5.1