diff --git a/README.md b/README.md index 88e6ded3..43c249ed 100644 --- a/README.md +++ b/README.md @@ -22,12 +22,13 @@ A React + Redux web application for exploring large scale single cell RNA sequen #### To use with virtual env for python (optional, but recommended) - python3 -m venv - source /bin/activate + ENV_NAME=cellxgene + python3 -m venv ${ENV_NAME} + source ${ENV_NAME}/bin/activate #### install server - python setup.py install + python3 setup.py install #### run (with demo data) diff --git a/server/app/app.py b/server/app/app.py index 3bc4f981..4cd08ce4 100644 --- a/server/app/app.py +++ b/server/app/app.py @@ -15,7 +15,7 @@ Compress(app) CORS(app) # Config -CXG_DIR = os.environ.get("CXG_DIRECTORY", default="/Users/charlotteweaver/Documents/Git/cxg-v2/data/") +CXG_DIR = os.environ.get("CXG_DIRECTORY", default="example-dataset/") SECRET_KEY = os.environ.get("CXG_SECRET_KEY", default="SparkleAndShine") ENGINE = os.environ.get("CXG_ENGINE", default="scanpy") TITLE = os.environ.get("DATASET_TITLE", default="PBMC 3K")