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Filename dialogue includes gene sets (#2185)

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* change filenames

* gene-sets to anno dialogue

* logging, lambda

* celllabels

* cell dash labels

* space

* fix 2182 - annotation file name change on the backend

Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
This commit is contained in:
Colin Megill
2021-05-07 17:32:11 -04:00
committed by GitHub
co-authored by bkmartinjr
parent 096d8ff1d2
commit d04dba225f
2 changed files with 13 additions and 7 deletions
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backend/server/common/annotations/local_file_csv.py
+2 -2
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@@ -197,14 +197,14 @@ class AnnotationsLocalFile(Annotations):
if self.label_output_file:
return self.label_output_file
return self._get_filename(data_adaptor, "celllabels")
return self._get_filename(data_adaptor, "cell-labels")
def _get_genesets_filename(self, data_adaptor):
""" return the current gene sets file name """
if self.gene_sets_output_file:
return self.gene_sets_output_file
return self._get_filename(data_adaptor, "genesets")
return self._get_filename(data_adaptor, "gene-sets")
def _get_filename(self, data_adaptor, anno_name):
# we need to generate a file name, which we can only do if we have a UID and collection name