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Initial tests for the rest v2 refactor

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testing the annotations and the data format validation
This commit is contained in:
Charlotte Weaver
2018-08-10 16:57:41 -07:00
parent 55fa9b892a
commit d44d267bda
4 changed files with 15 additions and 55 deletions
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server/app/scanpy_engine/scanpy_engine.py
+3 -1
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@@ -9,6 +9,7 @@ from scipy import stats
from server.app.app import cache
from server.app.driver.driver import CXGDriver
class ScanpyEngine(CXGDriver):
def __init__(self, data, graph_method="umap", diffexp_method="ttest"):
@@ -49,7 +50,8 @@ class ScanpyEngine(CXGDriver):
def _validatate_data_types(self):
if self.data.X.dtype != 'float32':
warnings.warn(f"Scanpy data matrix is in {self.data.X.dtype} format not float32. Precision may be truncated.")
warnings.warn(f"Scanpy data matrix is in {self.data.X.dtype} format not float32. "
f"Precision may be truncated.")
def cells(self):
return list(self.data.obs.index)