fork/cellxgene
1
0
Fork 0
mirror of https://github.com/chanzuckerberg/cellxgene.git synced 2026-09-30 13:48:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

Ontologies (#1110)

Browse Source 
* add sample ontologies file

* add ontologies reducer

* Move select category to own component

* Dialog and Input factored out

* refactoring categorical, partway

* validationn

* anno

* suggest  populates input

* frontend for ontology working

* initial implementation of back-end support for ontologies

* edit is now dialog again

* autosuggest working on edit

* part way through create arbitrary label

* handle choice in function

* pass duplicate cat  prop

* editing works

* update test to match new CLI params

* fix occupancy alignment

* edit category as dialogue

* secondary button

* remove stubbed out ontologies

* add label setting upon new label creation

* Update legal characters for labels (#1119)

* Allow any term in the ontology (bypass legal name check)

* Add hyphens and parens to legal characters in names

* improve performance for large ontologies

* correctly handle case where ontologies are disabled

* fix logic error in CLI

Co-authored-by: Bruce Martin <bruce@chanzuckerberg.com>

* PR cleanup 1

* lint

* validate user generated labels

* finish hooking up connected suggest component

* protect against undefined callbacks

* Fix illegal characters error message

* break out npm run commands

* fix error detection on label edit

Co-authored-by: Bruce Martin <bruce@chanzuckerberg.com>
Co-authored-by: Sidney Bell <sidneymbell@users.noreply.github.com>
This commit is contained in:
Colin Megill
2020-01-23 17:04:17 -05:00
committed by GitHub
co-authored by Bruce Martin Sidney Bell
parent 8d725b1ad9
commit d48647a655
20 changed files with 964 additions and 532 deletions
Download Patch File Download Diff File Expand all files Collapse all files
client/package.json
+2 -1
View File
@@ -6,7 +6,8 @@
"repository": "https://github.com/chanzuckerberg/cellxgene",
"scripts": {
"backend-dev": "python3.6 -m venv cellxgene && source cellxgene/bin/activate && yes | pip uninstall cellxgene || true && pip install -e .. && cellxgene launch ",
"backend-dev-anno": "python3.6 -m venv cellxgene && source cellxgene/bin/activate && yes | pip uninstall cellxgene || true && pip install -e .. && cellxgene launch --experimental-annotations ",
"backend-dev-anno-ontology": "python3.6 -m venv cellxgene && source cellxgene/bin/activate && yes | pip uninstall cellxgene || true && pip install -e .. && cellxgene launch --experimental-annotations --experimental-annotations-ontology",
"backend-dev-anno": "python3.6 -m venv cellxgene && source cellxgene/bin/activate && yes | pip uninstall cellxgene || true && pip install -e .. && cellxgene launch --experimental-annotations",
"build": "npm run clean && webpack --config configuration/webpack/webpack.config.prod.js",
"clean": "rimraf build",
"dev": "npm run clean && webpack --config configuration/webpack/webpack.config.dev.js",