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prepare - work around anndata bug (#1260)

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* work around anndata bug 344

* fix accidental cut and paste error

* Use modified make_index_unique function

Temporarily copy code from https://github.com/theislab/anndata/pull/345
until the issue is resolved and released.

* Add notes and test for make_index_unique

* Lint fix

* Format python

Co-authored-by: Matt Weiden <538456+mweiden@users.noreply.github.com>
This commit is contained in:
Bruce Martin
2020-03-22 12:27:59 -07:00
committed by GitHub
co-authored by Matt Weiden
parent db7a485796
commit d99b84ba09
7 changed files with 86 additions and 29 deletions
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server/data_cxg/cxg_adaptor.py
+3 -5
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@@ -17,11 +17,9 @@ import threading
class CxgAdaptor(DataAdaptor):
# TODO: The tiledb context parameters should be a configuration option
tiledb_ctx = tiledb.Ctx({
"sm.tile_cache_size": 8 * 1024 * 1024 * 1024,
"sm.num_reader_threads": 32,
"vfs.s3.region": "us-east-1"
})
tiledb_ctx = tiledb.Ctx(
{"sm.tile_cache_size": 8 * 1024 * 1024 * 1024, "sm.num_reader_threads": 32, "vfs.s3.region": "us-east-1"}
)
def __init__(self, data_locator, config=None):
super().__init__(config)