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diffexp limit UI and configuration (#1336)
* warning on maxCount for diffexp * cleanup logging * clarification * make the limits configurable * make diff exp limit work * danger! * remove debugging code * fix merge with master * fix unit tests Co-authored-by: Colin Megill <colinmegill@gmail.com>
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Colin Megill
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d457988810
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@@ -41,11 +41,11 @@ class AdaptorTest(unittest.TestCase):
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"diffexp__lfc_cutoff": 0.01,
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"adaptor__anndata_adaptor__backed": self.backed,
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"single_dataset__datapath": self.data_locator,
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"limits__diffexp_cellcount_max": None,
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"limits__column_request_max": None
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}
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config = AppConfig()
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config.update(**args)
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for k in config.limits.keys():
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config.limits[k] = None
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config.complete_config()
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self.data = AnndataAdaptor(DataLocator(self.data_locator), config)
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