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Gene sets UI, right sidebar refactor (#2097)
* prototyping
* render histos on open gene set
* prototyping
* render histos on open gene set
* factor out add genes to own component
* remove unused import
* mock reducer
* color by geneset stub
* menus and buttons
* geneset dialogue stub
* remove heatmap mock
* componetize histogram
* reenable add genes
* re-add isuserdefined
* test data
* remove have fetched
* add isExpanded state to gene, and pass to histogram
* expand button
* toggleable
* mini
* bump number of genes to 50
* don't clear diffexp on subset
* move create category to top
* render diffexp as geneset
* geneset show mean expression
* gene set reducer
* add geneset UI reducer
* wire e2e gene set loading prototype
* fix sniffing bug
* fix typo
* add gene modals
* client/src/actions/
* add autosave
* rename data-dir cli param
* add geneset, add gene, delete set
* prototype: remove csv upload placeholder
* handle delete gene from set
* prepopulate geneset with genes from modal
* add geneset: rename action
* icons, language consistency
* chevron after
* handle empty string case on genes for create geneset
* edit geneset
* fix language on create
* copy correction
* add popper2
upgrade react popper
upgrade react popper
adding popover2 package
* truncate uses tooltip2
* gene set button text typo
* remove logging
* moving server over
* remove test imports
* don't try to destructure map, use array.from
* fix add gene map datastructure error
* Revert "fix add gene map datastructure error"
This reverts commit b0eed45952.
* name --> genesetName, genes --> geneSymbols
* add gene to geneset, temporary format
* handle empty case, clear form input
* lint -- genesets wasn't passed via props
* userinfo
* move genes string to object conversion to action
* remove tmp gene description
* emptystring default for description
* remove empty string
* remove top level package json
* remove package lock as well
* remove flag for feature toggle
* remove comments in geneset
* comment cleanup
* remove comment
* revert diffexp genes to 10
* color by gene set
* disable color by gene set
* Gene menus are now inline, remove dead prototype code
* remove todo, magic number to variable
* remove jshint in rightsidebar
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
* remove unused geneset validation code
* tmp format pending geneset description
* move magic number into variable
* reorganize genesetsUI reducer pending tests
* rewire edit given new action name
* add basic validation and feedback for geneset name uniqueness
* mv annoDialog
* mv label, repair paths
* Update client/src/components/brushableHistogram/header.js
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
* add imports for icon in histo
* update jest snapshots given blueprint/tooltip2 usage of index -1
* ensure no empty paragraph
* intent from blueprint
* remove remainder of jshint references
* do not push undo when autosave fires
* fix autosave bugs
* remove todos
* clamp to util
* scient to util
* revert clearing diffexp
* rename value to be more specific stacked bar
* clean up logging and commetns
* remove gene entry tests pending rewrite
* tab index -1
* update jest snapshot, blueprint tooltip 2
* caret margin
* snapshot update
* ensure histogram is centered
* add geneset actions to config
* comment maybeScientific
* comment clamp
* comment ui reducer
* remove prototype code
* remove error log
* remove references to bl.ocks
* componetize parseBulkGeneString
* catch case where geneset rename same name
* genesetui reducer tests
* add geneset ui to index reducer config
Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
This commit is contained in:
co-authored by
Severiano Badajoz
bkmartinjr
parent
5335c39184
commit
e6e358ddc8
@@ -17,6 +17,8 @@ const skipOnActions = new Set([
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"window resize",
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"reset colorscale",
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"reset centroid labels",
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"geneset: initial load",
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"geneset: set tid",
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"graph brush change",
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"continuous metadata histogram brush",
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@@ -30,6 +32,9 @@ const skipOnActions = new Set([
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"writable obs annotations - save complete",
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"writable obs annotations - save started",
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"writable obs annotations - save error",
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"autosave: genesets started",
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"autosave: genesets error",
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"autosave: genesets complete",
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/* annotation component action */
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"annotation: activate add new label mode",
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@@ -39,6 +44,14 @@ const skipOnActions = new Set([
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"annotation: activate edit label mode",
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"annotation: cancel edit label mode",
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"set annotations collection name",
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/* geneset component action */
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"geneset: activate add new geneset mode",
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"geneset: disable create geneset mode",
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"geneset: activate add new genes mode",
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"geneset: disable add new genes mode",
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"geneset: activate rename geneset mode",
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"geneset: disable rename geneset mode",
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]);
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/*
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@@ -90,6 +103,14 @@ const saveOnActions = new Set([
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"annotation: label current cell selection",
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"annotation: delete label",
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"annotation: category edited",
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/* geneset component action */
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"geneset: create",
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"geneset: delete",
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"geneset: update",
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"geneset: add genes",
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"geneset: delete genes",
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"geneset: set gene description",
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]);
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/**
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