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hosted gene sets routes, plus a few bug fixes (#2155)

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* first cut at hosted gs routes

* lint

* update tests to match csv parser changes

* update tests to new API

* update gene set name validation rules to match requirements

* add path mapping from dataset to geneset

* add test cases for geneset GET route

* fix test assertion

* remove debugging code

* update gene set uri mapping function

* fix error message

* allow extra user-specified headers in gene set csv file

* clarify comment
This commit is contained in:
Bruce Martin
2021-04-27 13:58:58 -07:00
committed by GitHub
parent ebeb1c8818
commit f2e9aecebe
19 changed files with 702 additions and 267 deletions
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backend/czi_hosted/common/config/client_config.py
+3
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@@ -44,6 +44,9 @@ def get_client_config(app_config, data_adaptor):
"annotations": False,
"annotations_file": None,
"annotations_dir": None,
"annotations_genesets": True, # feature flag
"annotations_genesets_readonly": True,
"annotations_genesets_summary_methods": ["mean"],
"annotations_cell_ontology_enabled": False,
"annotations_cell_ontology_obopath": None,
"annotations_cell_ontology_terms": None,