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hosted gene sets routes, plus a few bug fixes (#2155)

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* first cut at hosted gs routes

* lint

* update tests to match csv parser changes

* update tests to new API

* update gene set name validation rules to match requirements

* add path mapping from dataset to geneset

* add test cases for geneset GET route

* fix test assertion

* remove debugging code

* update gene set uri mapping function

* fix error message

* allow extra user-specified headers in gene set csv file

* clarify comment
This commit is contained in:
Bruce Martin
2021-04-27 13:58:58 -07:00
committed by GitHub
parent ebeb1c8818
commit f2e9aecebe
19 changed files with 702 additions and 267 deletions
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backend/server/common/config/dataset_config.py
+1 -1
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@@ -138,7 +138,7 @@ class DatasetConfig(BaseConfig):
if dirname is not None and (filename is not None or genesets_filename is not None):
raise ConfigurationError(
"'user-generated-data-dir' may not be used with annotations-file' or 'genesets-file'."
"'user-generated-data-dir' may not be used with 'annotations-file' or 'gene-sets-file'."
)
if filename is not None: