fork/cellxgene
1
0
Fork 0
mirror of https://github.com/chanzuckerberg/cellxgene.git synced 2026-10-01 21:28:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

hosted gene sets routes, plus a few bug fixes (#2155)

Browse Source 
* first cut at hosted gs routes

* lint

* update tests to match csv parser changes

* update tests to new API

* update gene set name validation rules to match requirements

* add path mapping from dataset to geneset

* add test cases for geneset GET route

* fix test assertion

* remove debugging code

* update gene set uri mapping function

* fix error message

* allow extra user-specified headers in gene set csv file

* clarify comment
This commit is contained in:
Bruce Martin
2021-04-27 13:58:58 -07:00
committed by GitHub
parent ebeb1c8818
commit f2e9aecebe
19 changed files with 702 additions and 267 deletions
Download Patch File Download Diff File Expand all files Collapse all files
backend/test/fixtures/pbmc3k-genesets.csv
Vendored
+5 -5
View File
@@ -1,10 +1,10 @@
# Test fixture
gene_set_name, gene_set_description, gene_symbol, gene_description
gene_set_name,gene_set_description,gene_symbol,gene_description
first gene set name,,F5, a gene_description
first gene set name,a description, NO_SUCH_GENE, non-existent gene
first gene set name,a description, F5, duplicate gene
first gene set name, a description, SUMO3,
first gene set name,, SRM,
first gene set name,a description,NO_SUCH_GENE, non-existent gene
first gene set name,a description,F5, duplicate gene
first gene set name, a description,SUMO3,
first gene set name,,SRM,
second gene set,,RER1
second gene set,,SIK1
third gene set,,NO_SUCH_GENE
1 # Test fixture
2 gene_set_name, gene_set_description, gene_symbol, gene_description gene_set_name,gene_set_description,gene_symbol,gene_description
3 first gene set name,,F5, a gene_description
4 first gene set name,a description, NO_SUCH_GENE, non-existent gene first gene set name,a description,NO_SUCH_GENE, non-existent gene
5 first gene set name,a description, F5, duplicate gene first gene set name,a description,F5, duplicate gene
6 first gene set name, a description, SUMO3, first gene set name, a description,SUMO3,
7 first gene set name,, SRM, first gene set name,,SRM,
8 second gene set,,RER1
9 second gene set,,SIK1
10 third gene set,,NO_SUCH_GENE