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copy gene sets separately

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This commit is contained in:
Colin Megill
2021-06-10 17:28:51 -07:00
parent e075c487e2
commit f320f7fd31
1 changed files with 5 additions and 3 deletions
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client/Makefile
+5 -3
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@@ -1,7 +1,8 @@
include ../common.mk include ../common.mk
TEST_CSVS := $(if $(ANNOTATIONS),$(ANNOTATIONS),../backend/test/fixtures/{pbmc3k-annotations.csv,pbmc3k-genesets.csv}) ANNOTATIONS := $(if $(ANNOTATIONS),$(ANNOTATIONS),../backend/test/fixtures/pbmc3k-annotations.csv)
ANNOTATIONS_FILENAME := $(shell basename $(ANNOTATIONS)) GENE_SETS := $(if $(ANNOTATIONS),$(ANNOTATIONS),../backend/test/fixtures/pbmc3k-genesets.csv)
ANNOTATIONS_FILENAME := $(shell basename $(TEST_CSVS))
CXG_CONFIG := $(if $(CXG_CONFIG), $(CXG_CONFIG), ./__tests__/e2e/test_config.yaml) CXG_CONFIG := $(if $(CXG_CONFIG), $(CXG_CONFIG), ./__tests__/e2e/test_config.yaml)
@@ -41,7 +42,8 @@ smoke-test:
.PHONY: smoke-test-annotations .PHONY: smoke-test-annotations
smoke-test-annotations: smoke-test-annotations:
$(eval TMP_DIR := $(shell mktemp -d /tmp/cellxgene_XXXXXX)) $(eval TMP_DIR := $(shell mktemp -d /tmp/cellxgene_XXXXXX))
cp $(TEST_CSVS) $(TMP_DIR)/ && \ cp $(ANNOTATIONS) $(TMP_DIR)/ && \
cp $(GENE_SETS) $(TMP_DIR)/ && \
start_server_and_test \ start_server_and_test \
'CXG_OPTIONS="--annotations-file $(TMP_DIR)/$(ANNOTATIONS_FILENAME)" $(MAKE) start-server' \ 'CXG_OPTIONS="--annotations-file $(TMP_DIR)/$(ANNOTATIONS_FILENAME)" $(MAKE) start-server' \
$(CXG_SERVER_PORT) \ $(CXG_SERVER_PORT) \