genesets e2e tests (#2241)

* __test: create geneset

* example dataset test geneset

* delete geneset test

* edit __test

* gene crud

* Update client/Makefile

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>

* copy gene sets separately

* make fix

* ignore test files locally

* csv update

* updated csvs

* fix unit tests for gene set load routes

* add missing fix to czi_hosted unit test

* pin tiledb version, for czi_hosted backend, to <0.9

* Revert tiledb pin to be less than 0.9. Broken tests have been updated in main branch.

* newline, gitignore

* color by and subset

* diffexp sets equal

* add diff exp test class

* fix data class

* diffexp snapshot

* snapshot

* snap3

* snapshot parentInnerhtml

* remove snap

* updated anno snaps

* add test class to gene list div

* new snapshots

* kick off

* Revert "kick off"

This reverts commit 743f551d55.

* remove import

* eol

* revert changes to csv re: gene tests

* global name

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
Co-authored-by: Arathi Mani <arathi.mani@chanzuckerberg.com>
Co-authored-by: maniarathi <mani.arathi@gmail.com>
This commit is contained in:
Colin Megill
2021-07-01 21:29:06 -04:00
committed by GitHub
co-authored by Severiano Badajoz bkmartinjr Arathi Mani maniarathi
parent b714c18e75
commit face1b3033
21 changed files with 564 additions and 47 deletions
+7 -2
View File
@@ -5,8 +5,8 @@ first gene set name,a description,NO_SUCH_GENE, non-existent gene
first gene set name,a description,F5, duplicate gene
first gene set name, a description,SUMO3,
first gene set name,,SRM,
second gene set,,RER1
second gene set,,SIK1
second_gene_set,,RER1
second_gene_set,,SIK1
third gene set,,NO_SUCH_GENE
fourth_gene_set,fourth description,,gene intentionally missing
fifth_dataset,,,
@@ -14,3 +14,8 @@ summary test,,ACD,
summary test,,AATF,
summary test,,F5,
summary test,,PIGU,
geneset_to_delete,,,
geneset_to_edit,,,
fill_this_geneset,,RER1,
empty_this_geneset,,SIK1,
brush_this_gene,,SIK1,
1 # Test fixture
5 first gene set name,a description,F5, duplicate gene
6 first gene set name, a description,SUMO3,
7 first gene set name,,SRM,
8 second gene set,,RER1 second_gene_set,,RER1
9 second gene set,,SIK1 second_gene_set,,SIK1
10 third gene set,,NO_SUCH_GENE
11 fourth_gene_set,fourth description,,gene intentionally missing
12 fifth_dataset,,,
14 summary test,,AATF,
15 summary test,,F5,
16 summary test,,PIGU,
17 geneset_to_delete,,,
18 geneset_to_edit,,,
19 fill_this_geneset,,RER1,
20 empty_this_geneset,,SIK1,
21 brush_this_gene,,SIK1,