fork/cellxgene
1
0
Fork 0
mirror of https://github.com/chanzuckerberg/cellxgene.git synced 2026-09-30 12:18:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

genesets e2e tests (#2241)

Browse Source 
* __test: create geneset

* example dataset test geneset

* delete geneset test

* edit __test

* gene crud

* Update client/Makefile

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>

* copy gene sets separately

* make fix

* ignore test files locally

* csv update

* updated csvs

* fix unit tests for gene set load routes

* add missing fix to czi_hosted unit test

* pin tiledb version, for czi_hosted backend, to <0.9

* Revert tiledb pin to be less than 0.9. Broken tests have been updated in main branch.

* newline, gitignore

* color by and subset

* diffexp sets equal

* add diff exp test class

* fix data class

* diffexp snapshot

* snapshot

* snap3

* snapshot parentInnerhtml

* remove snap

* updated anno snaps

* add test class to gene list div

* new snapshots

* kick off

* Revert "kick off"

This reverts commit 743f551d55.

* remove import

* eol

* revert changes to csv re: gene tests

* global name

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
Co-authored-by: Arathi Mani <arathi.mani@chanzuckerberg.com>
Co-authored-by: maniarathi <mani.arathi@gmail.com>
This commit is contained in:
Colin Megill
2021-07-01 21:29:06 -04:00
committed by GitHub
co-authored by Severiano Badajoz bkmartinjr Arathi Mani maniarathi
parent b714c18e75
commit face1b3033
21 changed files with 564 additions and 47 deletions
Download Patch File Download Diff File Expand all files Collapse all files
backend/test/test_server/unit/common/test_api.py
+25 -3
View File
@@ -575,7 +575,7 @@ class EndPointsAnnDataGenesets(unittest.TestCase, EndPoints):
{"gene_description": "", "gene_symbol": "SIK1"},
],
"geneset_description": "",
"geneset_name": "second gene set",
"geneset_name": "second_gene_set",
},
{"genes": [], "geneset_description": "", "geneset_name": "third gene set"},
{"genes": [], "geneset_description": "fourth description", "geneset_name": "fourth_gene_set"},
@@ -590,6 +590,23 @@ class EndPointsAnnDataGenesets(unittest.TestCase, EndPoints):
"geneset_description": "",
"geneset_name": "summary test",
},
{'genes': [], 'geneset_description': '', 'geneset_name': 'geneset_to_delete'},
{'genes': [], 'geneset_description': '', 'geneset_name': 'geneset_to_edit'},
{
'genes': [{'gene_description': '', 'gene_symbol': 'RER1'}],
'geneset_description': '',
'geneset_name': 'fill_this_geneset'
},
{
'genes': [{'gene_description': '', 'gene_symbol': 'SIK1'}],
'geneset_description': '',
'geneset_name': 'empty_this_geneset'
},
{
'genes': [{'gene_description': '', 'gene_symbol': 'SIK1'}],
'geneset_description': '',
'geneset_name': 'brush_this_gene'
}
],
"tid": 0,
},
@@ -607,8 +624,8 @@ class EndPointsAnnDataGenesets(unittest.TestCase, EndPoints):
first gene set name,a description,F5, a gene_description\r
first gene set name,a description,SUMO3,\r
first gene set name,a description,SRM,\r
second gene set,,RER1,\r
second gene set,,SIK1,\r
second_gene_set,,RER1,\r
second_gene_set,,SIK1,\r
third gene set,,,\r
fourth_gene_set,fourth description,,\r
fifth_dataset,,,\r
@@ -616,6 +633,11 @@ summary test,,ACD,\r
summary test,,AATF,\r
summary test,,F5,\r
summary test,,PIGU,\r
geneset_to_delete,,,\r
geneset_to_edit,,,\r
fill_this_geneset,,RER1,\r
empty_this_geneset,,SIK1,\r
brush_this_gene,,SIK1,\r
""",
)