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genesets e2e tests (#2241)

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* __test: create geneset

* example dataset test geneset

* delete geneset test

* edit __test

* gene crud

* Update client/Makefile

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>

* copy gene sets separately

* make fix

* ignore test files locally

* csv update

* updated csvs

* fix unit tests for gene set load routes

* add missing fix to czi_hosted unit test

* pin tiledb version, for czi_hosted backend, to <0.9

* Revert tiledb pin to be less than 0.9. Broken tests have been updated in main branch.

* newline, gitignore

* color by and subset

* diffexp sets equal

* add diff exp test class

* fix data class

* diffexp snapshot

* snapshot

* snap3

* snapshot parentInnerhtml

* remove snap

* updated anno snaps

* add test class to gene list div

* new snapshots

* kick off

* Revert "kick off"

This reverts commit 743f551d55.

* remove import

* eol

* revert changes to csv re: gene tests

* global name

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
Co-authored-by: Arathi Mani <arathi.mani@chanzuckerberg.com>
Co-authored-by: maniarathi <mani.arathi@gmail.com>
This commit is contained in:
Colin Megill
2021-07-01 21:29:06 -04:00
committed by GitHub
co-authored by Severiano Badajoz bkmartinjr Arathi Mani maniarathi
parent b714c18e75
commit face1b3033
21 changed files with 564 additions and 47 deletions
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backend/test/test_server/unit/common/test_api.py
+25 -3
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@@ -575,7 +575,7 @@ class EndPointsAnnDataGenesets(unittest.TestCase, EndPoints):
{"gene_description": "", "gene_symbol": "SIK1"},
],
"geneset_description": "",
"geneset_name": "second gene set",
"geneset_name": "second_gene_set",
},
{"genes": [], "geneset_description": "", "geneset_name": "third gene set"},
{"genes": [], "geneset_description": "fourth description", "geneset_name": "fourth_gene_set"},
@@ -590,6 +590,23 @@ class EndPointsAnnDataGenesets(unittest.TestCase, EndPoints):
"geneset_description": "",
"geneset_name": "summary test",
},
{'genes': [], 'geneset_description': '', 'geneset_name': 'geneset_to_delete'},
{'genes': [], 'geneset_description': '', 'geneset_name': 'geneset_to_edit'},
{
'genes': [{'gene_description': '', 'gene_symbol': 'RER1'}],
'geneset_description': '',
'geneset_name': 'fill_this_geneset'
},
{
'genes': [{'gene_description': '', 'gene_symbol': 'SIK1'}],
'geneset_description': '',
'geneset_name': 'empty_this_geneset'
},
{
'genes': [{'gene_description': '', 'gene_symbol': 'SIK1'}],
'geneset_description': '',
'geneset_name': 'brush_this_gene'
}
],
"tid": 0,
},
@@ -607,8 +624,8 @@ class EndPointsAnnDataGenesets(unittest.TestCase, EndPoints):
first gene set name,a description,F5, a gene_description\r
first gene set name,a description,SUMO3,\r
first gene set name,a description,SRM,\r
second gene set,,RER1,\r
second gene set,,SIK1,\r
second_gene_set,,RER1,\r
second_gene_set,,SIK1,\r
third gene set,,,\r
fourth_gene_set,fourth description,,\r
fifth_dataset,,,\r
@@ -616,6 +633,11 @@ summary test,,ACD,\r
summary test,,AATF,\r
summary test,,F5,\r
summary test,,PIGU,\r
geneset_to_delete,,,\r
geneset_to_edit,,,\r
fill_this_geneset,,RER1,\r
empty_this_geneset,,SIK1,\r
brush_this_gene,,SIK1,\r
""",
)