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genesets e2e tests (#2241)

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* __test: create geneset

* example dataset test geneset

* delete geneset test

* edit __test

* gene crud

* Update client/Makefile

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>

* copy gene sets separately

* make fix

* ignore test files locally

* csv update

* updated csvs

* fix unit tests for gene set load routes

* add missing fix to czi_hosted unit test

* pin tiledb version, for czi_hosted backend, to <0.9

* Revert tiledb pin to be less than 0.9. Broken tests have been updated in main branch.

* newline, gitignore

* color by and subset

* diffexp sets equal

* add diff exp test class

* fix data class

* diffexp snapshot

* snapshot

* snap3

* snapshot parentInnerhtml

* remove snap

* updated anno snaps

* add test class to gene list div

* new snapshots

* kick off

* Revert "kick off"

This reverts commit 743f551d55.

* remove import

* eol

* revert changes to csv re: gene tests

* global name

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
Co-authored-by: Arathi Mani <arathi.mani@chanzuckerberg.com>
Co-authored-by: maniarathi <mani.arathi@gmail.com>
This commit is contained in:
Colin Megill
2021-07-01 21:29:06 -04:00
committed by GitHub
co-authored by Severiano Badajoz bkmartinjr Arathi Mani maniarathi
parent b714c18e75
commit face1b3033
21 changed files with 564 additions and 47 deletions
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client/Makefile
+5 -1
View File
@@ -1,10 +1,13 @@
include ../common.mk
ANNOTATIONS := $(if $(ANNOTATIONS),$(ANNOTATIONS),../backend/test/fixtures/pbmc3k-annotations.csv)
GENE_SETS := $(if $(GENE_SETS),$(GENE_SETS),../backend/test/fixtures/pbmc3k-genesets.csv)
ANNOTATIONS_FILENAME := $(shell basename $(ANNOTATIONS))
GENE_SETS_FILENAME := $(shell basename $(GENE_SETS))
CXG_CONFIG := $(if $(CXG_CONFIG), $(CXG_CONFIG), ./__tests__/e2e/test_config.yaml)
# Packaging
.PHONY: clean
clean:
@@ -42,8 +45,9 @@ smoke-test:
smoke-test-annotations:
$(eval TMP_DIR := $(shell mktemp -d /tmp/cellxgene_XXXXXX))
cp $(ANNOTATIONS) $(TMP_DIR)/ && \
cp $(GENE_SETS) $(TMP_DIR)/ && \
start_server_and_test \
'CXG_OPTIONS="--annotations-file $(TMP_DIR)/$(ANNOTATIONS_FILENAME)" $(MAKE) start-server' \
'CXG_OPTIONS="--annotations-file $(TMP_DIR)/$(ANNOTATIONS_FILENAME) --gene-sets-file $(TMP_DIR)/$(GENE_SETS_FILENAME)" $(MAKE) start-server' \
$(CXG_SERVER_PORT) \
'CXG_URL_BASE="http://localhost:$(CXG_SERVER_PORT)" npm run e2e-annotations -- --verbose false'
rm -rf $(TMP_DIR)