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genesets e2e tests (#2241)

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* __test: create geneset

* example dataset test geneset

* delete geneset test

* edit __test

* gene crud

* Update client/Makefile

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>

* copy gene sets separately

* make fix

* ignore test files locally

* csv update

* updated csvs

* fix unit tests for gene set load routes

* add missing fix to czi_hosted unit test

* pin tiledb version, for czi_hosted backend, to <0.9

* Revert tiledb pin to be less than 0.9. Broken tests have been updated in main branch.

* newline, gitignore

* color by and subset

* diffexp sets equal

* add diff exp test class

* fix data class

* diffexp snapshot

* snapshot

* snap3

* snapshot parentInnerhtml

* remove snap

* updated anno snaps

* add test class to gene list div

* new snapshots

* kick off

* Revert "kick off"

This reverts commit 743f551d55.

* remove import

* eol

* revert changes to csv re: gene tests

* global name

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
Co-authored-by: Arathi Mani <arathi.mani@chanzuckerberg.com>
Co-authored-by: maniarathi <mani.arathi@gmail.com>
This commit is contained in:
Colin Megill
2021-07-01 21:29:06 -04:00
committed by GitHub
co-authored by Severiano Badajoz bkmartinjr Arathi Mani maniarathi
parent b714c18e75
commit face1b3033
21 changed files with 564 additions and 47 deletions
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client/__tests__/e2e/diffexpGeneSets.js
+105
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export const diffexpPop1Genes = [
"CD79A",
"HLA-DRB1",
"HLA-DQA1",
"HLA-DPB1",
"HLA-DQB1",
"HLA-DPA1",
"MS4A1",
"LTB",
"CD79B",
"CD37",
"HLA-DMA",
"TCL1A",
"LINC00926",
"HLA-DMB",
"HVCN1",
"EAF2",
"FCRLA",
"IRF8",
"PKIG",
"P2RX5",
"HLA-DOB",
"SPIB",
"BLNK",
"SWAP70",
"PNOC",
"CD19",
"SMIM14",
"CD72",
"KIAA0125",
"IGLL5",
"ARHGAP24",
"COTL1",
"C16orf74",
"BTK",
"SNX29P2",
"ADAM28",
"FCGR2B",
"PLD4",
"PPP1R14A",
"MZB1",
"KIAA0040",
"PHACTR1",
"FCRL2",
"RIC3",
"P2RY10",
"SCPEP1",
"DRAM2",
"RP5-887A10.1",
"CD82",
"GPX1",
];
export const diffexpPop2Genes = [
"NKG7",
"GZMB",
"CTSW",
"PRF1",
"GNLY",
"GZMA",
"CST7",
"FGFBP2",
"SRGN",
"CD247",
"FCGR3A",
"TYROBP",
"FCER1G",
"ID2",
"SPON2",
"CCL4",
"CCL5",
"GZMH",
"GIMAP7",
"CLIC3",
"HOPX",
"XCL2",
"LGALS1",
"IGFBP7",
"AKR1C3",
"IL32",
"EFHD2",
"PRSS23",
"TTC38",
"ZAP70",
"S1PR5",
"SAMD3",
"GIMAP4",
"CCL3",
"ABI3",
"XCL1",
"S100A6",
"UBB",
"GPR56",
"PDIA3",
"S100A11",
"APOBEC3G",
"HAVCR2",
"PLEKHF1",
"LITAF",
"ARPC5L",
"PTGDR",
"PRMT2",
"GSTP1",
"FCRL6",
];