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Split out the local backend (#2052)

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This splits the backend into two parts: the local backend for desktop cellxgene and the AWS backend for hosted cellxgene. The local backend is in local_server while the hosted remains in server. The general idea is to copy everything from server to local_server, pull unneeded stuff out of local_server, and keep server as-is for this PR. Not touching server means all the infra and deployment code will continue working just as it did before so we can make those changes incrementally.
This commit is contained in:
Marcus Kinsella
2021-02-18 12:58:22 -08:00
committed by GitHub
parent 036b5f8c0f
commit fb61bd6e9c
153 changed files with 14027 additions and 46 deletions
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local_server/converters/schema/schema_definitions/1_0_0.yaml
+95
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title: Corpora schema version 1.0.0
type: anndata
components:
uns:
type: dict
keys:
version:
type: dict
keys:
corpora_schema_version: null
corpora_encoding_version: null
title:
type: string
contributors:
type: stringified list of dicts
layer_descriptions:
type: dict
keys:
X: null
organism:
type: string
nullable: false
organism_ontology_term_id:
type: curie
prefixes:
- NCBITaxon
var:
type: dataframe
index:
type: human-readable string
unique: true
obs:
type: dataframe
index:
unique: true
columns:
tissue:
type: human-readable string
nullable: false
tissue_ontology_term_id:
type: suffixed curie
nullable: true
prefixes:
- UBERON
assay:
type: human-readable string
nullable: false
assay_ontology_term_id:
type: curie
nullable: true
prefixes:
- EFO
disease:
type: human-readable string
nullable: false
disease_ontology_term_id:
type: curie
nullable: true
prefixes:
- MONDO
- PATO
cell_type:
type: human-readable string
nullable: false
cell_type_ontology_term_id:
type: curie
nullable: true
prefixes:
- CL
- UBERON
sex:
type: string
enum:
- male
- female
- mixed
- unknown
- other
ethnicity:
type: human-readable string
nullable: false
ethnicity_ontology_term_id:
type: curie
nullable: true
prefixes:
- HANCESTRO
development_stage:
type: human-readable string
nullable: false
development_stage_ontology_term_id:
type: curie
nullable: true
prefixes:
- HsapDv
- EFO
local_server/converters/schema/schema_definitions/1_1_0.yaml
+93
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title: Corpora schema version 1.1.0
type: anndata
components:
uns:
type: dict
keys:
version:
type: dict
keys:
corpora_schema_version: null
corpora_encoding_version: null
title:
type: string
layer_descriptions:
type: dict
keys:
X: null
organism:
type: string
nullable: false
organism_ontology_term_id:
type: curie
prefixes:
- NCBITaxon
var:
type: dataframe
index:
type: human-readable string
unique: true
obs:
type: dataframe
index:
unique: true
columns:
tissue:
type: human-readable string
nullable: false
tissue_ontology_term_id:
type: suffixed curie
nullable: true
prefixes:
- UBERON
assay:
type: human-readable string
nullable: false
assay_ontology_term_id:
type: curie
nullable: true
prefixes:
- EFO
disease:
type: human-readable string
nullable: false
disease_ontology_term_id:
type: curie
nullable: true
prefixes:
- MONDO
- PATO
cell_type:
type: human-readable string
nullable: false
cell_type_ontology_term_id:
type: curie
nullable: true
prefixes:
- CL
- UBERON
sex:
type: string
enum:
- male
- female
- mixed
- unknown
- other
ethnicity:
type: human-readable string
nullable: false
ethnicity_ontology_term_id:
type: curie
nullable: true
prefixes:
- HANCESTRO
development_stage:
type: human-readable string
nullable: false
development_stage_ontology_term_id:
type: curie
nullable: true
prefixes:
- HsapDv
- EFO