Features

Cross-filter cells and color by metadata

Compare groups of cells with differential expression

See how metadata and gene expression break down across categories

Find cells where a gene is expressed

Compare expression of multiple genes

Interactive demos

Several groups have independently deployed various versions of cellxgene to the web. Check out the cool data that our users are using cellxgene to explore!

Kidney cell atlas

Tabula muris senis

Hemocytes

Melanoma

CZI’s own cellxgene site

Want us to link to your dataset here? Just send us a note!