Example datasets

To use these datasets, run:
cellxgene launch [filename.h5ad] --open

Peripheral blood mononuclear cells

Healthy human PBMCs (10X).

• Source: 10X genomics
• Cells: 2,638
• File size: 19MB
• Raw data
• Processing
• Launch:

  cellxgene launch https://cellxgene-example-data.czi.technology/pbmc3k.h5ad
  

Tabula muris

20 organs and tissues from healthy mice (Smart-Seq2).
Rich metadata and annotations.

• Source: bioRxiv, CZBiohub
• Cells: 45,423
• File size: 174MB
• Raw data
• Processing
• Launch:

  cellxgene launch https://cellxgene-example-data.czi.technology/tabula-muris.h5ad
  

Tabula muris senis

22 organs and tissues from healthy mice at ages 3mo, 18mo, 21mo, and 24mo (Smart-Seq2).
Rich metadata and annotations.

• Source: bioRxiv, CZBiohub
• Cells: 81,478
• File size: 3.9GB
• Raw data [geo link coming soon!]
• Processing
• Launch:

  cellxgene launch https://cellxgene-example-data.czi.technology/tabula-muris-senis.h5ad