# cellxgene

cellxgene is an interactive data explorer for single-cell transcriptomics data designed to handle large datasets (1 million cells or more) and integrate with your favorite analysis tools

## getting started

install the package
> `> pip install cellxgene`

preprocess the data for use with cellxgene (optional)
> `> cellxgene --prepare dataset.h5ad -o processed.h5ad`

launch the web app
> `> cellxgene --launch processed.h5ad`

## features

### help and contact

Have questions, suggestions, or comments? You can come hang out with us by joining the [CZI Science Slack](https://join-cziscience-slack.herokuapp.com/) and posting in the `#cellxgene-users` channel. As mentioned above, please submit any feature requests or bugs as [Github issues](https://github.com/chanzuckerberg/cellxgene/issues). We'd love to hear from you!