from functools import wraps from flask import json from numpy import float32, integer from server.app.util.errors import DriverError class Float32JSONEncoder(json.JSONEncoder): def __init__(self, *args, **kwargs): """ NaN/Infinities are illegal in standard JSON. Python extends JSON with non-standard symbols that most JavaScript JSON parsers do not understand. The `allow_nan` parameter will force Python simplejson to throw an ValueError if it runs into non-finite floating point values which are unsupported by standard JSON. """ kwargs["allow_nan"] = False super().__init__(*args, **kwargs) def default(self, obj): if isinstance(obj, float32): return float(obj) elif isinstance(obj, integer): return int(obj) return json.JSONEncoder.default(self, obj) def custom_format_warning(msg, *args, **kwargs): return f"[cellxgene] Warning: {msg} \n" def jsonify_scanpy(data): return json.dumps(data, cls=Float32JSONEncoder, allow_nan=False) def requires_data(func): @wraps(func) def wrapped_function(self, *args, **kwargs): if self.data is None: raise DriverError(f"error data must be loaded before you call {func.__name__}") return func(self, *args, **kwargs) return wrapped_function