import _ from "lodash"; import calcCentroid from "../../src/util/centroid"; import quantile from "../../src/util/quantile"; import * as Universe from "../../src/util/stateManager/universe"; import * as World from "../../src/util/stateManager/world"; import * as REST from "./stateManager/sampleResponses"; import { ControlsHelpers as CH } from "../../src/util/stateManager"; describe("centroid", () => { let world; let categoricalSelection; beforeAll(() => { // Create world + universe let universe = Universe.createUniverseFromResponse( _.cloneDeep(REST.config), _.cloneDeep(REST.schema) ); universe = { ...universe, ...Universe.addObsAnnotations( universe, Universe.matrixFBSToDataframe(REST.annotationsObs) ), ...Universe.addVarAnnotations( universe, Universe.matrixFBSToDataframe(REST.annotationsVar) ), ...Universe.addObsLayout( universe, Universe.matrixFBSToDataframe(REST.layoutObs) ) }; world = World.createWorldFromEntireUniverse(universe); // Create categorical selection from world categoricalSelection = CH.createCategoricalSelection( world, CH.selectableCategoryNames(world.schema, CH.maxCategoryItems(REST.config)) ); }); test("field4 (categorical obsAnnotation)", () => { const centroidResult = calcCentroid( world.obsAnnotations, world.obsLayout, "field4", ["umap_0", "umap_1"], categoricalSelection, world.schema.annotations.obsByName ); // Check to see that a centroid has been calculated for every categorical value const keysAsArray = Array.from(centroidResult.keys()); expect(keysAsArray).toEqual( expect.arrayContaining([83, true, "foo", 2.222222]) ); // This expected result assumes that all cells belong in all categorical values inside of sample response const expectedResult = [ quantile([0.5], world.obsLayout.col("umap_0").asArray())[0], quantile([0.5], world.obsLayout.col("umap_1").asArray())[0] ]; centroidResult.forEach(coordinate => { expect(coordinate).toEqual(expectedResult); }); }); test("field3 (boolean obsAnnotation)", () => { const centroidResult = calcCentroid( world.obsAnnotations, world.obsLayout, "field3", ["umap_0", "umap_1"], categoricalSelection, world.schema.annotations.obsByName ); // Check to see that a centroid has been calculated for every categorical value const keysAsArray = Array.from(centroidResult.keys()); expect(keysAsArray).toEqual(expect.arrayContaining([false, true])); // This expected result assumes that all cells belong in all categorical values inside of sample response const expectedResult = [ quantile([0.5], world.obsLayout.col("umap_0").asArray())[0], quantile([0.5], world.obsLayout.col("umap_1").asArray())[0] ]; centroidResult.forEach(coordinate => { expect(coordinate).toEqual(expectedResult); }); }); });