anndata>=0.7.0
boto3>=1.12.18
click>=7.1.2
fastobo>=0.6.1
Flask>=1.0.2
Flask-Compress>=1.4.0
Flask-Cors>=3.0.9  # CVE-2020-25032
Flask-RESTful>=0.3.6
flask-server-timing>=0.1.2
flask-talisman>=0.7.0
flatbuffers>=1.11.0
flatten-dict>=0.2.0
fsspec>=0.4.4,<0.8.0
gunicorn>=20.0.4
h5py<3.0.0 # h5py>=3.0.0 had a breaking change; there is a fix in anndata>=0.7.5
jinja2>=2.11.3  # Flask sub-dependency. Added due to CVE-2020-28493
numba>=0.51.2,<0.53.0
numpy>=1.17.5
packaging>=20.0
pandas>=1.0,!=1.1  # pandas 1.1 breaks tests, https://github.com/pandas-dev/pandas/issues/35446
PyYAML>=5.4  # CVE-2020-14343
scipy>=1.4
requests>=2.22.0
s3fs==0.4.2
scanpy==1.4.6 # Until we move to anndata 0.7.4 scanpy needs to be pinned here
umap-learn<0.5.0 # The pinned version scanpy is not compatible with latest umap-learn