import os from flask import Flask from flask_compress import Compress from flask_cors import CORS from flask_restful_swagger_2 import get_swagger_blueprint from .web import webapp from .rest_api.rest import get_api_resources REACTIVE_LIMIT = 1_000_000 app = Flask(__name__) Compress(app) CORS(app) # Config CXG_DIR = os.environ.get("CXG_DIRECTORY", default="example-dataset/") SECRET_KEY = os.environ.get("CXG_SECRET_KEY", default="SparkleAndShine") ENGINE = os.environ.get("CXG_ENGINE", default="scanpy") TITLE = os.environ.get("DATASET_TITLE", default="PBMC 3K") # TODO remove the 2 when this is prod CXG_API_BASE = os.environ.get("CXG_API_BASE2", default="http://0.0.0.0:5005/api/") app.config.update( SECRET_KEY=SECRET_KEY, CXG_API_BASE=CXG_API_BASE, ENGINE=ENGINE, DATA=CXG_DIR, DATASET_TITLE=TITLE ) app.config["PROFILE"] = True # app.wsgi_app = ProfilerMiddleware(app.wsgi_app, restrictions=[15]) # Application Data data = None if app.config["ENGINE"] == "scanpy": from .scanpy_engine.scanpy_engine import ScanpyEngine data = ScanpyEngine(app.config["DATA"], schema="data_schema.json") # A list of swagger document objects docs = [] resources = get_api_resources() docs.append(resources.get_swagger_doc()) app.register_blueprint(webapp.bp) app.register_blueprint(resources.blueprint) app.register_blueprint( get_swagger_blueprint(docs, "/api/swagger", produces=["application/json"], title="cellxgene rest api", description="An API connecting ExpressionMatrix2 clustering algorithm to cellxgene")) app.add_url_rule("/", endpoint="index") def main(): app.run(host="0.0.0.0", debug=True, port=5005)