mirror of
https://github.com/chanzuckerberg/cellxgene.git
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30e19e47c6
add `cellxgene annotate` subcommand for invoking MLflow model to generate new `obs` annotations, initially intended for cell type annotations.
37 lines
908 B
Python
37 lines
908 B
Python
import click
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from .annotate import annotate
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from .launch import launch
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from .prepare import prepare
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from .upgrade import log_upgrade_check
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from .. import __version__
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@click.group(
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name="cellxgene",
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subcommand_metavar="COMMAND <args>",
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options_metavar="<options>",
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context_settings=dict(max_content_width=85, help_option_names=["-h", "--help"]),
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)
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@click.help_option("--help", "-h", help="Show this message and exit.")
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@click.version_option(
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version=__version__,
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prog_name="cellxgene",
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message="[%(prog)s] Version %(version)s",
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help="Show the software version and exit.",
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)
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@click.option(
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"--upgrade-check/--no-upgrade-check",
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default=True,
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show_default=True,
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help="Check for release upgrades on start.",
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)
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def cli(upgrade_check):
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if upgrade_check:
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log_upgrade_check()
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cli.add_command(launch)
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cli.add_command(annotate)
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cli.add_command(prepare)
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