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https://github.com/chanzuckerberg/cellxgene.git
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* revert all commits to before Typescript migration * update compat workflow to match latest deps (#2335) * update compat workflow to match latest deps * attempt to debug * attempt to debug * remove debugging code * typo * update deps to match desktop (#2340) * fix: don't run lint with `--fix` on push tests (#2273) * fix: don't run lint with `--fix` on push tests * npx Co-authored-by: maniarathi <mani.arathi@gmail.com> Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com> * rename X_approx_distribution to X_approximate_distribution (#2337) * Correctly handle non-finite numbers in heuristic determination of X distribution (#2342) * handle non-finites explicitly * improve and test edge case handling for distribution estimation * revert debugging changes * code readability * clean up type inferencing (#2332) * unit tests for 64 bit conversion * clean up type handling * type inference tests * more type inference fixes * use schema to determine user intent for data typing * stop using deprecated API * fbs type encoding test * add missing test * add more tests * correctly infer X type for CXG adaptor * lint * fix typo * ts migration * cleanup from PR review * lint * PR review changes * remove unused packages from client (#2359) * remove unused packages from client * add missing peer dep * fix: disable FE auth testing on compatibility tests (#2377) * update: release process (#2277) Co-authored-by: maniarathi <mani.arathi@gmail.com> * fix: remove spaces in param setup (#2380) * delete deploy workflow (#2396) * undo reformatting which now does not pass lint * fix snapshots which changed due to npm dep changes * add missing quoting to snapshot * another snapshot typo fix * TS Revert (2) - replay PR #2347 and #2354 (#2403) * replay edits from PR 2347 * TS Revert (3) - replay edits in PR #2327 (#2404) * replay edits in PR 2327 * TS Revert (4) - replay PR #2355 (#2405) * replay edits in PR 2355 * add additional babel config * reformat with new prettier config Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com> Co-authored-by: maniarathi <mani.arathi@gmail.com> Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com>
383 lines
8.6 KiB
JavaScript
383 lines
8.6 KiB
JavaScript
import sha1 from "sha1";
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import {
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_whereCacheGet,
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_whereCacheCreate,
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_whereCacheMerge,
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} from "../../../src/annoMatrix/whereCache";
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const schema = {};
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describe("whereCache", () => {
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test("whereCacheGet - where query, missing cache values", () => {
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expect(
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_whereCacheGet({}, schema, "X", {
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where: {
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field: "var",
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column: "foo",
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value: "bar",
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},
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})
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).toEqual([undefined]);
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expect(
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_whereCacheGet({}, schema, "X", {
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summarize: {
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field: "var",
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column: "foo",
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values: ["bar"],
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},
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})
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).toEqual([undefined]);
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expect(
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_whereCacheGet({ where: { X: {} } }, schema, "X", {
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where: {
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field: "var",
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column: "foo",
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value: "bar",
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},
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})
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).toEqual([undefined]);
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expect(
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_whereCacheGet({ where: { X: { var: new Map() } } }, schema, "X", {
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where: {
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field: "var",
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column: "foo",
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value: "bar",
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},
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})
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).toEqual([undefined]);
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expect(
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_whereCacheGet(
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{ where: { X: { var: new Map([["foo", new Map()]]) } } },
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schema,
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"X",
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{
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where: {
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field: "var",
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column: "foo",
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value: "bar",
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},
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}
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)
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).toEqual([undefined]);
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});
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test("whereCacheGet - summarize query, missing cache values", () => {
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expect(
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_whereCacheGet({}, schema, "X", {
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summarize: {
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method: "mean",
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field: "var",
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column: "foo",
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values: ["bar"],
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},
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})
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).toEqual([undefined]);
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expect(
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_whereCacheGet(
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{ summarize: { X: { mean: { var: new Map() } } } },
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schema,
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"X",
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{
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summarize: {
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method: "mean",
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field: "var",
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column: "foo",
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values: ["bar"],
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},
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}
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)
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).toEqual([undefined]);
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});
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test("whereCacheGet - varied lookups", () => {
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const whereCache = {
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where: {
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X: {
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var: new Map([
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[
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"foo",
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new Map([
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["bar", [0]],
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["baz", [1, 2]],
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]),
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],
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]),
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},
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},
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summarize: {
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X: {
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mean: {
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var: new Map([
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[
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"foo",
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new Map([
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[sha1("bar"), [0]],
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[sha1("baz"), [1, 2]],
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]),
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],
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]),
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},
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},
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},
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};
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expect(
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_whereCacheGet(whereCache, schema, "X", {
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where: {
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field: "var",
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column: "foo",
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value: "bar",
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},
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})
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).toEqual([0]);
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expect(
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_whereCacheGet(whereCache, schema, "X", {
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summarize: {
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method: "mean",
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field: "var",
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column: "foo",
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values: ["bar"],
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},
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})
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).toEqual([0]);
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expect(
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_whereCacheGet(whereCache, schema, "X", {
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where: {
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field: "var",
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column: "foo",
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value: "baz",
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},
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})
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).toEqual([1, 2]);
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expect(
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_whereCacheGet(whereCache, schema, "X", {
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summarize: {
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method: "mean",
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field: "var",
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column: "foo",
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values: ["baz"],
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},
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})
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).toEqual([1, 2]);
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expect(_whereCacheGet(whereCache, schema, "Y", {})).toEqual([undefined]);
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expect(
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_whereCacheGet(whereCache, schema, "X", {
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where: {
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field: "whoknows",
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column: "whatever",
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value: "snork",
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},
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})
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).toEqual([undefined]);
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expect(
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_whereCacheGet(whereCache, schema, "X", {
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where: {
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field: "var",
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column: "whatever",
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value: "snork",
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},
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})
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).toEqual([undefined]);
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expect(
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_whereCacheGet(whereCache, schema, "X", {
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where: {
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field: "var",
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column: "foo",
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value: "snork",
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},
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})
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).toEqual([undefined]);
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});
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test("whereCacheCreate, where query", () => {
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const query = {
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where: {
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field: "queryField",
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column: "queryColumn",
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value: "queryValue",
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},
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};
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const wc = _whereCacheCreate(
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"field",
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{
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where: {
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field: "queryField",
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column: "queryColumn",
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value: "queryValue",
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},
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},
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[0, 1, 2]
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);
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expect(wc).toBeDefined();
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expect(wc).toEqual(
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expect.objectContaining({
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where: {
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field: {
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queryField: expect.any(Map),
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},
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},
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})
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);
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expect(wc.where.field.queryField.has("queryColumn")).toEqual(true);
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expect(wc.where.field.queryField.get("queryColumn")).toBeInstanceOf(Map);
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expect(
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wc.where.field.queryField.get("queryColumn").has("queryValue")
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).toEqual(true);
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expect(_whereCacheGet(wc, schema, "field", query)).toEqual([0, 1, 2]);
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});
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test("whereCacheCreate, summarize query", () => {
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const query = {
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summarize: {
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method: "method",
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field: "queryField",
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column: "queryColumn",
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values: ["queryValue"],
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},
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};
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const wc = _whereCacheCreate("field", query, [0, 1, 2]);
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expect(_whereCacheGet(wc, schema, "field", query)).toEqual([0, 1, 2]);
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});
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test("whereCacheCreate, unknown query type", () => {
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expect(_whereCacheCreate("field", { foobar: true }, [1])).toEqual({});
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});
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test("whereCacheMerge, where queries", () => {
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let wc;
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// remember, will mutate dst
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const src = _whereCacheCreate(
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"field",
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{ where: { field: "queryField", column: "queryColumn", value: "foo" } },
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["foo"]
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);
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const dst1 = _whereCacheCreate(
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"field",
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{ where: { field: "queryField", column: "queryColumn", value: "bar" } },
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["dst1"]
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);
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wc = _whereCacheMerge(dst1, src);
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expect(
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_whereCacheGet(wc, schema, "field", {
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where: {
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field: "queryField",
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column: "queryColumn",
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value: "foo",
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},
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})
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).toEqual(["foo"]);
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expect(
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_whereCacheGet(wc, schema, "field", {
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where: {
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field: "queryField",
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column: "queryColumn",
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value: "bar",
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},
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})
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).toEqual(["dst1"]);
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const dst2 = _whereCacheCreate(
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"field",
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{ where: { field: "queryField", column: "queryColumn", value: "bar" } },
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["dst2"]
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);
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wc = _whereCacheMerge(dst2, dst1, src);
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expect(
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_whereCacheGet(wc, schema, "field", {
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where: {
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field: "queryField",
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column: "queryColumn",
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value: "foo",
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},
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})
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).toEqual(["foo"]);
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expect(
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_whereCacheGet(wc, schema, "field", {
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where: {
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field: "queryField",
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column: "queryColumn",
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value: "bar",
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},
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})
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).toEqual(["dst1"]);
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wc = _whereCacheMerge({}, src);
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expect(wc).toEqual(src);
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wc = _whereCacheMerge({ where: { field: { queryField: new Map() } } }, src);
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expect(wc).toEqual(src);
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});
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test("whereCacheMerge, mixed queries", () => {
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const wc = _whereCacheMerge(
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_whereCacheCreate(
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"field",
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{
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where: {
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field: "queryField",
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column: "queryColumn",
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value: "foo",
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},
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},
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["a"]
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),
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_whereCacheCreate(
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"field",
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{
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summarize: {
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method: "mean",
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field: "queryField",
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column: "queryColumn",
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values: ["foo", "bar", "baz"],
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},
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},
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["b"]
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)
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);
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expect(
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_whereCacheGet(wc, schema, "field", {
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where: {
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field: "queryField",
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column: "queryColumn",
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value: "foo",
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},
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})
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).toEqual(["a"]);
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expect(
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_whereCacheGet(wc, schema, "field", {
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summarize: {
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method: "mean",
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field: "queryField",
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column: "queryColumn",
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values: ["foo", "bar", "baz"],
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},
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})
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).toEqual(["b"]);
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expect(
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_whereCacheGet(wc, schema, "field", {
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where: {
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field: "queryField",
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column: "queryColumn",
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value: "does-not-exist",
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},
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})
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).toEqual([undefined]);
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expect(
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_whereCacheGet(wc, schema, "field", {
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summarize: {
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method: "no-such-method",
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field: "queryField",
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column: "queryColumn",
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values: ["does-not-exist"],
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},
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})
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).toEqual([undefined]);
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});
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});
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