mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-24 17:48:12 +08:00
Marcus Kinsella
fb61bd6e9c
This splits the backend into two parts: the local backend for desktop cellxgene and the AWS backend for hosted cellxgene. The local backend is in local_server while the hosted remains in server. The general idea is to copy everything from server to local_server, pull unneeded stuff out of local_server, and keep server as-is for this PR. Not touching server means all the infra and deployment code will continue working just as it did before so we can make those changes incrementally.
25 lines
682 B
Plaintext
25 lines
682 B
Plaintext
anndata>=0.7.0
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boto3>=1.12.18
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click>=7.1.2
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fastobo>=0.6.1
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Flask>=1.0.2
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Flask-Compress>=1.4.0
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Flask-Cors>=3.0.6
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Flask-RESTful>=0.3.6
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flask-server-timing>=0.1.2
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flask-talisman>=0.7.0
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flatbuffers>=1.11.0
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flatten-dict>=0.2.0
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fsspec>=0.4.4,<0.8.0
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gunicorn>=20.0.4
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h5py<3.0.0 # h5py>=3.0.0 had a breaking change; there is a fix in anndata>=0.7.5
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numpy>=1.15.0
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packaging>=20.0
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pandas>=1.0,!=1.1 # pandas 1.1 breaks tests, https://github.com/pandas-dev/pandas/issues/35446
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PyYAML>=5.3
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scipy>=1.0
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requests>=2.22.0
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s3fs==0.4.2
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scanpy==1.4.6 # Until we move to anndata 0.7.4 scanpy needs to be pinned here
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umap-learn<0.5.0 # The pinned version scanpy is not compatible with latest umap-learn
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