mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-23 23:28:12 +08:00
Marcus Kinsella
fb61bd6e9c
This splits the backend into two parts: the local backend for desktop cellxgene and the AWS backend for hosted cellxgene. The local backend is in local_server while the hosted remains in server. The general idea is to copy everything from server to local_server, pull unneeded stuff out of local_server, and keep server as-is for this PR. Not touching server means all the infra and deployment code will continue working just as it did before so we can make those changes incrementally.
62 lines
2.1 KiB
Python
62 lines
2.1 KiB
Python
from http import HTTPStatus
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import unittest
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import math
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from local_server.test import start_test_server, stop_test_server
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import local_server.test.unit.decode_fbs as decode_fbs
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import requests
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VERSION = "v0.2"
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BAD_FILTER = {"filter": {"obs": {"annotation_value": [{"name": "xyz"}]}}}
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class WithNaNs(unittest.TestCase):
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"""Test Case for endpoints"""
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@classmethod
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def setUpClass(cls):
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cls.ps, cls.server = start_test_server(["test/fixtures/nan.h5ad"])
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@classmethod
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def tearDownClass(cls):
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stop_test_server(cls.ps)
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def setUp(self):
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self.session = requests.Session()
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self.url_base = f"{self.server}/api/{VERSION}/"
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def test_initialize(self):
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endpoint = "schema"
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url = f"{self.url_base}{endpoint}"
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result = self.session.get(url)
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self.assertEqual(result.status_code, HTTPStatus.OK)
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def test_data(self):
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endpoint = "data/var"
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url = f"{self.url_base}{endpoint}"
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filter = {"filter": {"var": {"index": [[0, 20]]}}}
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result = self.session.put(url, json=filter)
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self.assertEqual(result.status_code, HTTPStatus.OK)
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self.assertEqual(result.headers["Content-Type"], "application/octet-stream")
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df = decode_fbs.decode_matrix_FBS(result.content)
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self.assertTrue(math.isnan(df["columns"][3][3]))
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def test_annotation_obs(self):
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endpoint = "annotations/obs"
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url = f"{self.url_base}{endpoint}"
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result = self.session.get(url)
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self.assertEqual(result.status_code, HTTPStatus.OK)
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self.assertEqual(result.headers["Content-Type"], "application/octet-stream")
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df = decode_fbs.decode_matrix_FBS(result.content)
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self.assertTrue(math.isnan(df["columns"][2][0]))
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def test_annotation_var(self):
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endpoint = "annotations/var"
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url = f"{self.url_base}{endpoint}"
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result = self.session.get(url)
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self.assertEqual(result.status_code, HTTPStatus.OK)
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self.assertEqual(result.headers["Content-Type"], "application/octet-stream")
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df = decode_fbs.decode_matrix_FBS(result.content)
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self.assertTrue(math.isnan(df["columns"][2][0]))
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