Files
cellxgene/client/src/components/categorical/index.js
T
Bruce Martin 1269e188be Redux refactor (#1571)
* refactor categorical controls state

* lint

* fix race condition in tests

* fix typo

* add missing update on subset

* remove obsolete code

* update jest and puppeteer major version; update all minors

* update when label changes

* remove lint from tests; increase timeouts in e2e tests

* initial refactoring to new async annomatrix

* refine error handling

* fix bad merge

* add continuous legend

* lint

* fix memoization in color table creators

* partial implementation of user defined annotations

* add new annotations action creator file

* first pass at user annotations

* additional user annotation bug fixes

* user annotation auto-save

* unit test cleanup

* lint

* refactor into multiple files

* cleanup

* add column GC

* fix several bugs in user annotations

* remove debug code

* no anonymous functions

* undo redo cleanup

* file cleanup

* scatterplot

* performance

* cleanup

* remove old code

* render in parallel with load

* fix race condition

* simply graph rendering

* render throttle DRY

* fix category label order

* fix typo in e2e test setup

* re-fix the e2e test setup

* be more tolerant of races

* anno matrix unit tests

* temp disable reembedding

* pilot port continuous histo to react-async

* name change

* lint

* fix repaint bug

* typo fix

* update snap to match new ids

* world/universe name cleanup

* move annoMatrix to src dir

* use private underscore naming convention

* fix corner case in all selected

* name cleanup

* add layout control

* init edge case

* lint

* port scatterplot

* fix label indexing bug and improve tests

* port category to react-async

* fix user annotation labelling while subset

* select all of prev layout on layout switch

* fix race with crossfilter update

* prettier lint

* fix misleading comment

* fix url composition in loader

* first pass at crossfilter tests

* lint

* lint

* fix typo

* improved error handling for network errors

* fix memoization bug

* add memo

* refactor for performnce

* add missing single-value handling in select exact parser

* small bugs discovered by tests

* lint

* additional crossfilter unit tests

* remove extraneous comment

* add support for automatic category determination

* lint

* fix render bug in category

* take advantage of schema categories guarantee

* lint

* do not clear history when resetting

* enhanced annomatrix gc

* lint

* finish renaming to follow conventions; fix clone race bug

* lint

* add priority based loading to improve initial data load UX

* crossfilter cache perf

* perf tuning

* remove timers

* documentation

* PR review changes

* PR review changes

* more PR review edits

* improve clarity of comment

* more PR review fixes

* port centroidLabels to use react-async

* remove dead code

* pr review updates

* oops, remove logging
2020-07-14 13:53:33 -07:00

222 lines
6.3 KiB
JavaScript

// jshint esversion: 6
import React from "react";
import { Button } from "@blueprintjs/core";
import { connect } from "react-redux";
import * as globals from "../../globals";
import Category from "./category";
import { AnnotationsHelpers, ControlsHelpers } from "../../util/stateManager";
import AnnoDialog from "./annoDialog";
import AnnoSelect from "./annoSelect";
import LabelInput from "./labelInput";
import { labelPrompt } from "./labelUtil";
import actions from "../../actions";
@connect((state) => ({
writableCategoriesEnabled: state.config?.parameters?.annotations ?? false,
schema: state.annoMatrix?.schema,
ontology: state.ontology,
}))
class Categories extends React.Component {
constructor(props) {
super(props);
this.state = {
createAnnoModeActive: false,
newCategoryText: "",
categoryToDuplicate: null,
expandedCats: new Set(),
};
}
handleCreateUserAnno = (e) => {
const { dispatch } = this.props;
const { newCategoryText, categoryToDuplicate } = this.state;
dispatch(
actions.annotationCreateCategoryAction(
newCategoryText,
categoryToDuplicate
)
);
this.setState({
createAnnoModeActive: false,
categoryToDuplicate: null,
newCategoryText: "",
});
e.preventDefault();
};
handleEnableAnnoMode = () => {
this.setState({ createAnnoModeActive: true });
};
handleDisableAnnoMode = () => {
this.setState({
createAnnoModeActive: false,
categoryToDuplicate: null,
newCategoryText: "",
});
};
handleModalDuplicateCategorySelection = (d) => {
this.setState({ categoryToDuplicate: d });
};
categoryNameError = (name) => {
/*
return false if this is a LEGAL/acceptable category name or NULL/empty string,
or return an error type.
*/
/* allow empty string */
if (name === "") return false;
/*
test for uniqueness against *all* annotation names, not just the subset
we render as categorical.
*/
const { schema } = this.props;
const allCategoryNames = schema.annotations.obs.columns.map((c) => c.name);
/* check category name syntax */
const error = AnnotationsHelpers.annotationNameIsErroneous(name);
if (error) {
return error;
}
/* disallow duplicates */
if (allCategoryNames.indexOf(name) !== -1) {
return "duplicate";
}
/* otherwise, no error */
return false;
};
handleChange = (name) => {
this.setState({ newCategoryText: name });
};
handleSelect = (name) => {
this.setState({ newCategoryText: name });
};
instruction = (name) => {
return labelPrompt(
this.categoryNameError(name),
"New, unique category name",
":"
);
};
onExpansionChange = (catName) => {
const { expandedCats } = this.state;
if (expandedCats.has(catName)) {
const _expandedCats = new Set(expandedCats);
_expandedCats.delete(catName);
this.setState({ expandedCats: _expandedCats });
} else {
const _expandedCats = new Set(expandedCats);
_expandedCats.add(catName);
this.setState({ expandedCats: _expandedCats });
}
};
render() {
const {
createAnnoModeActive,
categoryToDuplicate,
newCategoryText,
expandedCats,
} = this.state;
const { writableCategoriesEnabled, schema, ontology } = this.props;
const ontologyEnabled = ontology?.enabled ?? false;
/* all names, sorted in display order. Will be rendered in this order */
const allCategoryNames = ControlsHelpers.selectableCategoryNames(
schema
).sort();
return (
<div
style={{
padding: globals.leftSidebarSectionPadding,
}}
>
<AnnoDialog
isActive={createAnnoModeActive}
title="Create new category"
instruction={this.instruction(newCategoryText)}
cancelTooltipContent="Close this dialog without creating a category."
primaryButtonText="Create new category"
primaryButtonProps={{ "data-testid": "submit-category" }}
text={newCategoryText}
validationError={this.categoryNameError(newCategoryText)}
handleSubmit={this.handleCreateUserAnno}
handleCancel={this.handleDisableAnnoMode}
annoInput={
<LabelInput
labelSuggestions={ontologyEnabled ? ontology.terms : null}
onChange={this.handleChange}
onSelect={this.handleSelect}
inputProps={{
"data-testid": "new-category-name",
leftIcon: "tag",
intent: "none",
autoFocus: true,
}}
newLabelMessage="New category"
/>
}
annoSelect={
<AnnoSelect
handleModalDuplicateCategorySelection={
this.handleModalDuplicateCategorySelection
}
categoryToDuplicate={categoryToDuplicate}
allCategoryNames={allCategoryNames}
/>
}
/>
{/* READ ONLY CATEGORICAL FIELDS */}
{/* this is duplicative but flat, could be abstracted */}
{allCategoryNames.map((catName) =>
!schema.annotations.obsByName[catName].writable ? (
<Category
key={catName}
metadataField={catName}
onExpansionChange={this.onExpansionChange}
isExpanded={expandedCats.has(catName)}
createAnnoModeActive={createAnnoModeActive}
/>
) : null
)}
{/* WRITEABLE FIELDS */}
{allCategoryNames.map((catName) =>
schema.annotations.obsByName[catName].writable ? (
<Category
key={catName}
metadataField={catName}
onExpansionChange={this.onExpansionChange}
isExpanded={expandedCats.has(catName)}
createAnnoModeActive={createAnnoModeActive}
/>
) : null
)}
{writableCategoriesEnabled ? (
<div>
<Button
data-testid="open-annotation-dialog"
onClick={this.handleEnableAnnoMode}
intent="primary"
>
Create new category
</Button>
</div>
) : null}
</div>
);
}
}
export default Categories;