mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-15 20:57:56 +08:00
1269e188be
* refactor categorical controls state * lint * fix race condition in tests * fix typo * add missing update on subset * remove obsolete code * update jest and puppeteer major version; update all minors * update when label changes * remove lint from tests; increase timeouts in e2e tests * initial refactoring to new async annomatrix * refine error handling * fix bad merge * add continuous legend * lint * fix memoization in color table creators * partial implementation of user defined annotations * add new annotations action creator file * first pass at user annotations * additional user annotation bug fixes * user annotation auto-save * unit test cleanup * lint * refactor into multiple files * cleanup * add column GC * fix several bugs in user annotations * remove debug code * no anonymous functions * undo redo cleanup * file cleanup * scatterplot * performance * cleanup * remove old code * render in parallel with load * fix race condition * simply graph rendering * render throttle DRY * fix category label order * fix typo in e2e test setup * re-fix the e2e test setup * be more tolerant of races * anno matrix unit tests * temp disable reembedding * pilot port continuous histo to react-async * name change * lint * fix repaint bug * typo fix * update snap to match new ids * world/universe name cleanup * move annoMatrix to src dir * use private underscore naming convention * fix corner case in all selected * name cleanup * add layout control * init edge case * lint * port scatterplot * fix label indexing bug and improve tests * port category to react-async * fix user annotation labelling while subset * select all of prev layout on layout switch * fix race with crossfilter update * prettier lint * fix misleading comment * fix url composition in loader * first pass at crossfilter tests * lint * lint * fix typo * improved error handling for network errors * fix memoization bug * add memo * refactor for performnce * add missing single-value handling in select exact parser * small bugs discovered by tests * lint * additional crossfilter unit tests * remove extraneous comment * add support for automatic category determination * lint * fix render bug in category * take advantage of schema categories guarantee * lint * do not clear history when resetting * enhanced annomatrix gc * lint * finish renaming to follow conventions; fix clone race bug * lint * add priority based loading to improve initial data load UX * crossfilter cache perf * perf tuning * remove timers * documentation * PR review changes * PR review changes * more PR review edits * improve clarity of comment * more PR review fixes * port centroidLabels to use react-async * remove dead code * pr review updates * oops, remove logging
171 lines
5.4 KiB
JSON
171 lines
5.4 KiB
JSON
{
|
|
"name": "cellxgene",
|
|
"version": "0.15.0",
|
|
"license": "MIT",
|
|
"description": "cellxgene is a web application for the interactive exploration of single cell sequence data.",
|
|
"repository": "https://github.com/chanzuckerberg/cellxgene",
|
|
"scripts": {
|
|
"build": "npm run clean && webpack --config",
|
|
"clean": "rimraf build",
|
|
"dev": "npm run build -- configuration/webpack/webpack.config.dev.js",
|
|
"e2e": "jest --config __tests__/e2e/e2eJestConfig.json e2e/e2e.test.js",
|
|
"e2e-annotations": "jest --config __tests__/e2e/e2eJestConfig.json e2e/e2eAnnotations.test.js",
|
|
"e2e-prod": "CXG_URL_BASE='https://cellxgene.cziscience.com/d/pbmc3k.cxg/' jest --config __tests__/e2e/e2eJestConfig.json e2e/e2e.test.js",
|
|
"fmt": "eslint --fix src __tests__",
|
|
"lint": "eslint --fix src __tests__",
|
|
"prod": "npm run build -- configuration/webpack/webpack.config.prod.js",
|
|
"test": "jest --testPathIgnorePatterns e2e"
|
|
},
|
|
"engineStrict": true,
|
|
"engines": {
|
|
"npm": ">=3.0.0"
|
|
},
|
|
"eslintConfig": {
|
|
"extends": "./configuration/eslint/eslint.js"
|
|
},
|
|
"eslintIgnore": [
|
|
"src/util/stateManager/matrix_generated.js"
|
|
],
|
|
"resolutions": {
|
|
"eslint-scope": "3.7.1"
|
|
},
|
|
"dependencies": {
|
|
"@blueprintjs/core": "^3.28.1",
|
|
"@blueprintjs/icons": "^3.18.0",
|
|
"@blueprintjs/select": "^3.13.2",
|
|
"d3": "^4.10.0",
|
|
"d3-scale-chromatic": "^1.5.0",
|
|
"flatbuffers": "^1.11.0",
|
|
"fuzzysort": "^1.1.4",
|
|
"gl-mat4": "^1.2.0",
|
|
"gl-matrix": "^3.3.0",
|
|
"gl-vec3": "^1.1.3",
|
|
"is-number": "^7.0.0",
|
|
"lodash": "^4.17.15",
|
|
"memoize-one": "^5.1.1",
|
|
"react": "^16.13.1",
|
|
"react-async": "^10.0.1",
|
|
"react-dom": "^16.13.1",
|
|
"react-flip-toolkit": "7.0.6",
|
|
"react-helmet": "^5.2.1",
|
|
"react-icons": "^3.10.0",
|
|
"react-redux": "^7.2.0",
|
|
"redux": "^4.0.5",
|
|
"redux-thunk": "^2.3.0",
|
|
"regl": "^1.6.1",
|
|
"tinyqueue": "^2.0.3"
|
|
},
|
|
"devDependencies": {
|
|
"@babel/core": "^7.10.2",
|
|
"@babel/plugin-proposal-class-properties": "^7.10.1",
|
|
"@babel/plugin-proposal-decorators": "^7.10.1",
|
|
"@babel/plugin-proposal-export-namespace-from": "^7.10.1",
|
|
"@babel/plugin-proposal-function-bind": "^7.10.1",
|
|
"@babel/plugin-proposal-nullish-coalescing-operator": "^7.10.1",
|
|
"@babel/plugin-proposal-optional-chaining": "^7.10.1",
|
|
"@babel/plugin-transform-react-constant-elements": "^7.10.1",
|
|
"@babel/plugin-transform-runtime": "^7.10.1",
|
|
"@babel/preset-env": "^7.10.2",
|
|
"@babel/preset-react": "^7.10.1",
|
|
"@babel/register": "^7.10.1",
|
|
"@babel/runtime": "^7.10.2",
|
|
"@sentry/webpack-plugin": "^1.11.1",
|
|
"babel-eslint": "^10.1.0",
|
|
"babel-jest": "^26.0.1",
|
|
"babel-loader": "^8.1.0",
|
|
"babel-preset-modern-browsers": "^14.2.1",
|
|
"chalk": "^4.0.0",
|
|
"cheerio": "^1.0.0-rc.3",
|
|
"clean-css": "^4.2.3",
|
|
"clean-webpack-plugin": "^3.0.0",
|
|
"codecov": "^3.7.0",
|
|
"connect-history-api-fallback": "^1.6.0",
|
|
"copy-webpack-plugin": "^5.1.1",
|
|
"css-loader": "^3.5.3",
|
|
"eslint": "^7.2.0",
|
|
"eslint-config-airbnb": "^18.0.1",
|
|
"eslint-config-prettier": "^6.11.0",
|
|
"eslint-loader": "^3.0.4",
|
|
"eslint-plugin-eslint-comments": "^3.2.0",
|
|
"eslint-plugin-filenames": "^1.3.2",
|
|
"eslint-plugin-import": "^2.21.1",
|
|
"eslint-plugin-jest": "^23.8.2",
|
|
"eslint-plugin-jsx-a11y": "^6.2.3",
|
|
"eslint-plugin-prettier": "^3.1.3",
|
|
"eslint-plugin-react": "^7.20.0",
|
|
"eslint-plugin-react-hooks": "^4.0.4",
|
|
"expect-puppeteer": "^4.4.0",
|
|
"express": "^4.17.1",
|
|
"favicons-webpack-plugin": "^3.0.1",
|
|
"file-loader": "^6.0.0",
|
|
"html-webpack-inline-source-plugin": "^1.0.0-beta.2",
|
|
"html-webpack-plugin": "^4.3.0",
|
|
"husky": "^4.2.5",
|
|
"jest": "^26.0.1",
|
|
"jest-circus": "^26.0.1",
|
|
"jest-environment-puppeteer": "^4.4.0",
|
|
"jest-fetch-mock": "^3.0.3",
|
|
"jest-puppeteer": "^4.4.0",
|
|
"json-loader": "^0.5.7",
|
|
"lint-staged": "^10.2.9",
|
|
"mini-css-extract-plugin": "^0.9.0",
|
|
"optimize-css-assets-webpack-plugin": "^5.0.3",
|
|
"prettier": "^2.0.5",
|
|
"puppeteer": "^3.3.0",
|
|
"rimraf": "^3.0.2",
|
|
"serve-favicon": "^2.5.0",
|
|
"style-loader": "^1.2.1",
|
|
"sw-precache-webpack-plugin": "^1.0.0",
|
|
"terser-webpack-plugin": "^2.3.7",
|
|
"url-loader": "^4.1.0",
|
|
"webpack": "^4.43.0",
|
|
"webpack-cli": "^3.3.11",
|
|
"webpack-dev-middleware": "^3.7.2"
|
|
},
|
|
"jest": {
|
|
"testMatch": [
|
|
"**/__tests__/**/?(*.)(spec|test).js?(x)"
|
|
],
|
|
"setupFiles": [
|
|
"./__tests__/setupMissingGlobals.js"
|
|
],
|
|
"coverageDirectory": "./coverage/",
|
|
"collectCoverage": true
|
|
},
|
|
"babel": {
|
|
"env": {
|
|
"test": {
|
|
"presets": [
|
|
"@babel/preset-env",
|
|
"@babel/preset-react"
|
|
],
|
|
"plugins": [
|
|
"@babel/plugin-proposal-function-bind",
|
|
[
|
|
"@babel/plugin-proposal-decorators",
|
|
{
|
|
"legacy": true
|
|
}
|
|
],
|
|
[
|
|
"@babel/plugin-proposal-class-properties",
|
|
{
|
|
"loose": true
|
|
}
|
|
],
|
|
"@babel/plugin-proposal-export-namespace-from",
|
|
"@babel/plugin-transform-react-constant-elements",
|
|
"@babel/plugin-transform-runtime",
|
|
"@babel/plugin-proposal-optional-chaining",
|
|
"@babel/plugin-proposal-nullish-coalescing-operator"
|
|
]
|
|
}
|
|
}
|
|
},
|
|
"husky": {
|
|
"hooks": {
|
|
"pre-commit": "lint-staged --config \"./configuration/lint-staged/lint-staged.config.js\""
|
|
}
|
|
}
|
|
}
|