mirror of
https://github.com/chanzuckerberg/cellxgene.git
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3660a6cc27
* icons, partway * redux for values * onChange * cancel * annotations lifecycle for category names * copy categorical * edit category * add Dataframe.withColsFrom * render user annotations; default add/delete annotation category * add label name to actions * category name edit * error checking improvements * change schema field isUserAnnotation to writable * always have an unassigned label; implement delete label * implement add new label and edit label name * label current cell selection * fix select exact bug in crossfilter * clean up categorical reducer * fix tests * remove debugging printf * implement subset/reset for user annotations * undo redo support for user annotations * remove duplicate button from categories * add modal * remove obsolete duplicate annotation reducers * remove old debugging printf * connect modal to annotation create and dup * initial full-stack wiring * finish up end-to-end wiring * fix existing unit tests * fix pytests to match new schema API * remove debugging printfs * add label file rotation * remove obsolete comment * add fbs encode/decode tests * add tests for writable annotations * simplify code * fix hashing bug with FBS encoding * lint * fix smoke tests * improve error checking in Dataframe.withColsFrom * add unit test for Dataframe.withColsFrom * add unit test for Dataframe.columns and Dataframe.renameCol * fix bug in FBS encode, add better error checks, refactor * add FBS encode/decode test * add clarifying comment * clean up action type names; fix state inconsistency in crossfilter update * change autosave timer to 2.5sec * sort categorical metadata render order so it remains consistent * add temporary autogenerated label for add-new-label operation * fix hover-over label menu interference with cell highlighting * remove debugging code * add missing reducer cases & fix typo * make dataframe memoize more general purpose * add dev mode for annos * fix error on select duplicate * handle zero occupancy categories * correctly maintain unclipped AND clipped world * correctly handle zero length FBS matrix and label files * ensure all writable categorical schema contains an unassigned category * handle case where building occupancy stack for category with no members * dialog for creating label, disable button if duplicate or empty * visually separate writeable * edit category * fix edit category name * remove debugging code * fix edit annotation label * visually define unassigned, change options * Pull in requirements.txt from `master` * label currently selected cells * duplicate label * lint * fix pytest merge issues * rename --label-file to --experimental-label-file * remove debugging console log * spelling error fix; fix bug found in PR review. * lint
71 lines
1.3 KiB
Python
71 lines
1.3 KiB
Python
class FilterError(Exception):
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"""
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Raised when filter is malformed
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"""
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def __init__(self, message):
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self.message = message
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class InteractiveError(Exception):
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"""
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Raised when computation would exceed interactive time
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"""
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def __init__(self, message):
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self.message = message
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class JSONEncodingValueError(Exception):
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"""
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Raised when file loaded into scanpy is misformatted
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"""
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def __init__(self, message):
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self.message = message
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class MimeTypeError(Exception):
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"""
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Raised when incompatible MIME type selected
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"""
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def __init__(self, message):
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self.message = message
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class PrepareError(Exception):
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"""
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Raised when data is misprepared
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"""
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def __init__(self, message):
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self.message = message
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class ScanpyFileError(Exception):
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"""
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Raised when file loaded into scanpy is misformatted
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"""
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def __init__(self, message):
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self.message = message
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class DriverError(Exception):
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"""
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Raised when file loaded into scanpy is misformatted
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"""
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def __init__(self, message):
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self.message = message
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class DisabledFeatureError(Exception):
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"""
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Raised when an attempt to use a disabled feature occurs
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"""
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def __init__(self, message):
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self.message = message
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